Full Papers


P 3 [PS file][PDF file]
TitleGenomic Analysis of the Genes Encoding Ribosomal Proteins in Eight Eubacterial Species and Saccharomyces cerevisiae
Author(s)Katsutoshi Fujita, Tomoya Baba, Katsumi Isono
P 13 [PS file][PDF file]
TitleConstruction of the gyrB Database for the Identification and Classification of Bacteria
Author(s)Hiroaki Kasai, Kanako Watanabe, Elizabeth Gasteiger, Amos Bairoch, Katsumi Isono, Satoshi Yamamoto, Shigeaki Harayama
P 22 [PS file][PDF file]
TitlePhylogenetic Invariants for Metazoan Mitochondrial Genome Evolution
Author(s)David Sankoff, Mathieu Blanchette
P 32 [PS file][PDF file]
TitleSystematic Prediction of Orthologous Units of Genes in the Complete Genomes
Author(s)Hidemasa Bono, Susumu Goto, Wataru Fujibuchi, Hiroyuki Ogata, Minoru Kanehisa
P 41 [PS file][PDF file]
TitleComprehensive Sequence Analyses of 5' Flanking Regions of Primate Alu Elements
Author(s)Yoshimi Toda, Rintaro Saito, Masaru Tomita
P 49 [PS file][PDF file]
TitleEvidence of Limited Structural Organization in Globin Intron Sequences of Messenger RNA
Author(s)Wayne Dawson, Kenji Yamamoto
P 62 [PS file][PDF file]
TitleIdentifying the Interaction between Genes and Gene Products Based on Frequently Seen Verbs in Medline Abstracts
Author(s)Takeshi Sekimizu, Hyun S. Park, Jun'ichi Tsujii
P 72 [PS file][PDF file]
TitleDetecting Gene Symbols and Names in Biological Texts : A First Step toward Pertinent Information Extraction
Author(s)Denys Proux, Fran\ccois Rechenmann, Laurent Julliard, Violaine Pillet, Bernard Jacq
P 81 [PS file][PDF file]
TitleDeveloping NLP Tools for Genome Informtics: An Information Extraction Perspective
Author(s)Teruyoshi Hishiki, Nigel Collier, Chikashi Nobata, Tomoko Okazaki-Ohta, Norihiro Ogata, Takeshi Sekimizu, Roland Steiner, Hyun S. Park, Jun'ichi Tsujii
P 91 [PS file][PDF file]
TitleA Machine Learning Approach to Reducing the Work of Experts in Article Selection from Database: A Case Study for Regulatory Relations of S. cerevisiae Genes in MEDLINE
Author(s)Shin-ichi Usuzaka, Kim Lan Sim, Miyako Tanaka, Hiroshi Matsuno, Satoru Miyano
P 102 [PS file][PDF file]
TitleUsing Kleisli to Bring Out Features in BLASTP Results
Author(s)Jing Chen, Daphna Strauss, Limsoon Wong
P 112 [PS file][PDF file]
TitleMUSCA: An Algorithm for Constrained Alignment of Multiple Data Sequences
Author(s)Laxmi Parida, Aris Floratos, Isidore Rigoutsos
P 120 [PS file][PDF file]
TitleImprovement of the A* Algorithm for Multiple Sequence Alignment
Author(s)Hirotada Kobayashi, Hiroshi Imai
P 131 [PS file][PDF file]
TitleParallel Protein Information Analysis (PAPIA) System Running on a 64-Node PC Cluster
Author(s)Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi, Makoto Ando
P 141 [PS file][PDF file]
TitleFinding Genetic Network from Experiments by Weighted Network Model
Author(s)Kiyoshi Noda, Ayumi Shinohara, Masayuki Takeda, Satoshi Matsumoto, Satoru Miyano, Satoru Kuhara
P 151 [PS file][PDF file]
TitleA System for Identifying Genetic Networks from Gene Expression Patterns Produced by Gene Disruptions and Overexpressions
Author(s)Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano
P 161 [PS file][PDF file]
TitleFully-Automated Spot Recognition and Matching Algorithms for 2-D Gel Electrophoretogram of Genomic DNA
Author(s)Katsutoshi Takahashi, Masayuki Nakazawa, Yasuo Watanabe, Akihiko Konagaya
P 173 [PS file][PDF file]
TitleHunting TPR Domains Using Kleisli
Author(s)Kui Lin, Anthony E. Ting, Jiren Wang, Limsoon Wong
P 183 [PS file][PDF file]
TitleLow Identity, Low Similarity Protein Sequences: Independent Modeling of the Ordered-Series-of-Motifs and Motif-Intervening-Regions
Author(s)Marcella A. McClure, Julianna Hudak, John Kowalski
P 193 [PS file][PDF file]
TitleThe Sequence Attribute Method for Determining Relationships Between Sequence and Protein Disorder
Author(s)Qian Xie, Gregory E. Arnold, Pedro Romero, Zoran Obradovic, Ethan Garner, A. Keith Dunker
P 201 [PS file][PDF file]
TitlePredicting Disordered Regions from Amino Acid Sequence: Common Themes Despite Differing Structural Characterization
Author(s)Ethan Garner, Paul Cannon, Pedro Romero, Zoran Obradovic, A. Keith Dunker