The Garden Hall, Yebisu Garden Place, Tokyo, Japan.
December 2 (9:30--17:30), 3 (9:30--17:30), 1996
Electronic Version of Genome Informatics Vol. 7 (1996)
Tatsuya AKUTSU Human Genome Center Institute of Medical Science, University of Tokyo 4-6-1 Shirokanedai, Minato-ku, Tokyo 108, Japan E-MAIL: workshop@ims.u-tokyo.ac.jp FAX: +81-3-5449-5434
1-13-2 Mita, Meguro-ku, Tokyo 153 JAPAN.
TEL: +81-3-5424-0111
FAX: +81-3-5424-1444
After arriving in Narita International Airport, take a train (either JR line or Keisei line) from the airport station:
Using Express (Narita Express) train, it takes about 1 hour (and 2,890 YEN) from the airport station to JR Tokyo station. From JR Tokyo station to JR Ebisu station, take JR Yamanote line to the direction of Shinagawa and Shibuya. It takes about 30 minutes.
Using Express (Skyliner) train, it takes about 1 hour (and 1,740 YEN) from the airport station to Keisei Ueno station. It takes about 5 minutes walk from Keisei Ueno station to JR Ueno station. From JR Ueno station to JR Ebisu station, take JR Yamanote line to the direction of Tokyo and Shinagawa. It takes about 40 minutes.
JR Yamanote Line:
/-- Shibuya ---...--- Shinjuku ---...--- Ikebukuro --\
/ \
Ebisu .
| .
Meguro .
| .
| |
\ /
\--...-- Shinagawa ---...--- Tokyo ---... --- Ueno ---/
| |
| JR Keiyou | Keisei Line
| Line |
v v
Narita Narita
From Ebisu Station to Yebisu Garden Place:
/
/
-----------------------------------/ Entrance of
| Sky Walk Garden Place
| East Exit ----------------------------
| |
Shibuya <---- | Ebisu sta. | -------------------> Meguro sta.
Sta. ---------------------
Although there are a lot of hotels in Tokyo, only a few of them are listed below. If you prefer the hotels below, you should make reservation for yourselves, by phone or by FAX. All of the hotels below stand near JR Yamanote line stations. It takes at most 15 minutes from each station to JR Ebisu station. Note that service charge and tax are not included except the U-Port hotel.
Shinagawa Prince Hotel (near JR Shinagawa Sta.)
Single room: 9,700 YEN, 10,200 YEN or 12,700 YEN
Twin room: 13,500 YEN or 16,500 YEN
TEL: +81-3-3440-1111
FAX: +81-3-3441-7092
New Otani Inn Tokyo (near JR Osaki Sta.)
Single room: 13,000 YEN
Twin room: 30,000 YEN
TEL: +81-3-3779-9111
FAX: +81-3-3779-9181
U-Port (near JR Gotanda Sta.)
Single room: 8,610 YEN
Twin room: 13,596 YEN
(Service charge and tax are included)
TEL: +81-3-3490-5111
FAX: +81-3-3779-5785
L. Zhang:
On a Mirkin-Muchnik-Smith conjecture for comparing molecular
phylogenies
Qian-Ping Gu, S. Peng, H. Sudborough:
Approximation algorithms for genome rearrangements
H. Matsuda, T. Ishihara, A. Hashimoto:
A clustering method for molecular sequences based on pairwise
similarity
F. Shi, P. Widmayer:
Approximate multiple strings searching by clustering
T. Shibuya, H. Imai:
Parametric alignment of multiple biological sequences
M. Yamaguchi, S. Shimozono, T. Shinohara:
Finding minimal multiple generalization over regular patterns
with alphabet indexing
Gordon M. Crippen (Univ. Michigan)
Failures of inverse folding and threading with gapped alignment
Pavel A. Pevzner (Univ. Southern California)
Transforming Men into Mice
S. Kanaya, Y. Kudo, S. Suzuki, T. Ikemura:
Systematization of species-specific diversity of genes in codon
usage: Comparison of the diversity among bacteria and prediction
of the protein production levels in cells
K. Nakai:
Refinement of the prediction methods of signal peptides for the
genome analyses of Saccharomyces cerevisiae and Bacillus subtilis
M. S. Gelfand, T. V. Astakhova, M. A. Roytberg:
An algorithm for highly specific recognition of protein-coding
regions
K. Asai, T. Yada, K. Itou:
Finding genes by hidden Markov models with a protein motif
dictionary
N. Furukawa, S. Matsumoto, A. Shinohara, T. Shoudai, S. Miyano:
HAKKE: a multi-strategy prediction system for sequences
C. A. Del Carpio, V. Gogonea:
Modeling proteins conformation in solution. Part I: a parallel
GA engine for protein conformational space mapping
N. N. Alexandrov, V. V. Solovyev:
Effect of secondary structure prediction on protein fold
recognition and database search
Hiroaki Kitano (SONY CSL)
Toward Computer-Aided Biology: A Synthetic Approach for Understanding Life
Susumu Tachi (U. Tokyo)
Virtual Reality and Tele-Existence
H. Ogata, H. Bono, W. Fujibuchi, S. Goto, M. Kanehisa:
Analysis of binary relations and hierarchies of enzymes in the
metabolic pathways
Y. Kitamura, H. Nakanishi, T. Nozaki, T. Miura, T. Ishida:
MetaViewer and MetaCommander: WWW tools for genome informatics
R. Gras, J. Nicolas:
FOREST, a browser for huge DNA sequences
T. Koike, et al.:
Development of new DDBJ DNA sequence database with data
annotation
A Taxonomy Database System for Managing Multimedia Contents
Hajime Kitakami, Yasuma Mori, Masatoshi Arikawa
Automated Identification of Three-Dimensional Motif in Proteins
Hiroaki Kato, Yoshimasa Takahashi
Characterization of Enzyme Structure by Informational Complexity
Takayuki Kamei, Yasuo Yonezawa
Java Version of Animal Genome Database
Y. Wada, H. Yasue
A Symbolic Representation for RNA Secondary Structures; towards the Construction of RNA Secondary Structures Data Base
A. Nakaya, A. Yonezawa, K. Yamamoto
Multiple Sequence Alignment Using a Genetic Algorithm
Masamichi Isokawa, Masato Wayama, Toshio Shimizu
Discovering Functional Sites of Amino Acid Sequences Using Sorted Variable Generalization
Takashi Ishikawa, Shigeki Mitaku, Takao Terano
Improvement of the Transmembrane Helix Prediction System by Three-Stage Model
Takatsugu Hirokawa, Seah Boon-Chieng, Shigeki Mitaku
Sequence Analysis of Short Tandem Repeats in the Genomes of H.influenzae and M.genitalium
Takanori Washio, Masahiko Wada, Masaru Tomita
On Correlation between G+C Contents and Introns Lengths: Longer Introns Tend to be More A+T Rich
Yasuhiro Asakawa, Masaru Tomita
CpG Dinucleotide Distribution and DNA Methylation
Tom Shimizu, Kouichi Takahashi, Masaru Tomita
Computer Analyses of Nucleotide Patterns around Start Codons
Rintaro Saito, Hidekazu Sasaki, Yuko Osada, Masaru Tomita
Computer Analyses of Overlapping Genes in Mycoplasma Genitalium
Yuko Osada, Ryo Matsushima, Masaru Tomita
Computer Analyses of Site-Specific Variabilities in Human Alu Sequences
Michiko Muraki, Masaru Tomita
Inferring History of Genomic Duplication Using Subclassified Alu Elements
Yoshimi Toda, Masaru Tomita
Motif Extraction: Normalization of Scores
Y. Fujiwara, M. Asogawa
Beta-sheet Prediction Using Inter-strand Residue Pairs and Refinement with Hopfield Neural Network
Minoru Asogawa
Building A Receptor Database
K. Nakata, M. Hayakawa, T. Igarashi, T. Kaminuma
Direct Comparison DNA and Amino Acid Sequences based on a Dynamic Programming Method
Naoko Kasahara, Susumu Hiraoka, Keiichi Nagai
SAKURA: A New Data Submission System of DDBJ to Meet Users' Needs in the Age of Mass Production of DNA Sequences
Hikaru Yamamoto, Takuro Tamura, Katsumi Isono, Takashi Gojobori, Hideaki Sugawara, Ken Nishikawa, Naruya Saitou, Tadashi Imanishi, Kaoru Fukami-Kobayashi, Kazuho Ikeo, Yoshio Tateno
Emergent Rhythms in an Artificial Chemical World Using `Genetic Switches'
Hiroaki Inayoshi, Hitoshi Iba
A New Software For Visualization of Large Proteins
Yutaka Ueno, Kiyoshi Asai
Automatic Discovery of Hidden Markov Representations for Functional Sites within DNA Sequences
Tetsushi Yada, Yasushi Totoki, Masato Ishikawa, Kiyoshi Asai
GeneHacker: Gene--Finding Program for the Prediction of Precise Protein Coding Regions
Makoto Hirosawa, Tetsushi Yada
CyanoBase: The Genome Database for Synechocystis sp. strain PCC6803
Yasukazu Nakamura, Nobuyuki Miyajima, Makoto Hirosawa, Takakazu Kaneko, Satoshi Tabata
Management System for Sequencing Data of Human Genome --- As a Part of {\em ALIS} ---
Mika Hirakawa, Kensaku Imai, Akira Ohyama, Fumihiko Kikuchi
Establishment and Management of Transcription Factor Database TFDB
T. Okazaki, M. Kaizawa, H. Mizushima
Very Fast Identification of tRNA in Genomic DNA
F. Lisacek, N. El Mabrouk
Predicting and Learning RNA Secondary Structures
Aki Hasegawa, Yasuo Uemura, Satoshi Kobayashi, Takashi Yokomori
Modeling Proteins Conformation in Solution. Part II: A Solvent Effect Model Based on the Evaluation of Solvent-Accessible Surface Area and Generalized Born Equation
Valentin Gogonea, Camelia Baleanu-Gogonea, Carlos A. Del Carpio
Sense-Antisense Homology Boxes in Proteins: Structural Motifs Enconded in the DNA?
Carlos A. Del Carpio, Valentin Gogonea, Katsuhisa Yamaguchi, Makoto Takei, Kouji Nishimura
Construction of the {\it Bacillus subtilis} ORF Database ({\bf BSORF DB})
A. Ogiwara, N. Ogasawara, M. Watanabe, T. Takagi
Clustering and Evolutional Analysis of E. coli Proteins
Suharnan Sivasundaram, Jun-ichi Takeda, Takeshi Itoh, Keiko Takemoto, Hidemi Watanabe, Hideo Matsuda, Hirotada Mori
High-Speed Genome Scanning Analysis Based on Automated Detection and Matching Spots in Autoradiogram Images of 2-D Gel Electrophoresis
Tomoyasu Takahashi, Katsutoshi Takahashi, Masayuki Nakazawa, Yasuo Watanabe
The Inference of Model-based Minimum Complexity in Reconstructing Molecular Phylogenetic Tree
F. Ren, H. Tanaka, T. Okayama
3DInSight: An Integrated Relational Database and Search Tool for Molecular Structures and Functional Sites
J. An, T. Nakama, Y. Kubota, A. Sarai
Poly-tRNA Structure in the Bacilluis Subtilis rrnB Operon is a Relic of an Early Peptide-Synthesizing Ribozyme Co-Ancestral to the E. coli trpE Gene and the Exon 2 of the Chicken Triose-Phosphate Isomerase Gene
Koji Ohnishi, Hiroshi Yanagawa
Mutation View : A Network-Transparent Database System for Mutations in the Human Disease Genes
S. Minoshima, S. Mitsuyama, N. Shimizu
Vestiges of Primordial Words in Base Sequences of Modern Genomes
Nobuyuki Uchikoga, Akira Suyama
A Prediction Method for Transmembrane Segments in Proteins Utilizing Multiple Discrimination Functions
Daisuke Kihara, Toshio Shimizu, Minoru Kanehisa
A Statistical Analysis of Gene Arrangement Patterns in Bacterial and Yeast Genomes
Kentaro Tomii, Minoru Kanehisa
Standard Gibbs Free Energy Changes of Enzyme Reactions in Metabolic Pathway Computation
Susumu Goto, Nobuhiro Fukushima, Minoru Kanehisa
Deductive Calculation Library for KEGG Pathway Simulation
Wataru Fujibuchi, Susumu Goto, Minoru Kanehisa
Genome Scale Prediction of Enzyme Genes Utilizing the Knowledge of Metabolic Interactions
Hidemasa Bono, Hiroyuki Ogata, Susumu Goto, Minoru Kanehisa
Java Applets for Handling Genome Maps in KEGG
Kazushige Sato, Toyoko Katsurada, Tomomi Kamiya, Mayuko Egoshi, Minoru Kanehisa
Finding Coding Region Using Secondary Hexamer Measure and Two-Dimensional Linear Discriminant Analysis
Katsuhiko Murakami, Toshihisa Takagi
Information Finding from Biological Papers
Yoshihiro Ohta, Yasunori Yamamoto, Ikuo Uchiyama, Toshihisa Takagi
Constructing a Dictionary of Biological Terms for Information Extraction
Yasunori Yamamoto, Yoshihiro Ohta, Ikuo Uchiyama, Toshihisa Takagi
A Refinement System for Large Amount of cDNA Data
Haretsugu Hishigaki, Kagehiko Kitano, Yusuke Nakamura, Hiroumi Maekawa, Toshihisa Takagi
Automatic Classification of Protein Structures with Deductive Database System
Yoshihisa Yamamura, Yukiko Tsukamoto, Kenji Satou, Emiko Furuichi, Toshihisa Takagi, Satoru Kuhara
Application of Data Mining to Genetic Linkage Analysis
Nobutaka Mitsuhashi, Haretsugu Hishigaki, Toshihisa Takagi
Mining Binary Diagram Rules
Kazuya Inoue, Osamu Maruyama, Takayoshi Shoudai, Satoru Miyano
A PAC-Learning Algorithm for Conformation Rules and its Experiments
Osamu Maruyama, Erika Tateishi, Emiko Furuichi, Satoru Kuhara, Satoru Miyano
An Image Analysis System for Two-Dimensional Gel Electrophoresis
Akira Ohyama, Kyotetsu Kanaya, Tatsuya Akutsu, Asao Fujiyama
Multiple Alignment of Biological Sequences Containing Tandem Repeat
Hidetoshi Kitada, Kazuhiro Tono, Masahito Yamamoto, Tamotsu Mitamura, Azuma Ohuchi, Toshio ohyanagi, Norio Matsushima
Harmonic Analysis of Protein Sequences
Meeta Rani, Chanchal K. Mitra
The Seventh Workshop on Genome Informatics (GIW'96)
December 2--3, 1996 Tokyo, Japan
Registration Form
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(If your are Japanese, please use both Kanji and English.)
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Return Form to: Secretariat, The Seventh Workshop on Genome Informatics
c/o Human Genome Center
The Institute of Medical Science, The University of Tokyo
4-6-1 Shirokanedai, Minato-ku, Tokyo 108 JAPAN
FAX: +81-3-5449-5434
E-MAIL: workshop@ims.u-tokyo.ac.jp