List of Accepted Posters

Progress of ProTherm: Theromodynamic Database for Proteins and Mutants
--- M. Michael Gromiha, Jianghong An, Hidetoshi Kono, Motohisa Oobatake, Hatsuho Uedaira, P. Prabakaran, Akinori Sarai
SLAD - An Integrated Swine MHC Database: A Case Study of Data Warehousing in Molecular Immunology
--- Christian Schonbach, Vladimir Brusic, Judice L.Y. Koh
Thermodynamic Database for Protein-Nucleic Acid Interactions
--- P. Prabakaran, Jianghong An, M. Michael Gromiha, S. Selvaraj, Hatsuho Uedaira, Hidetoshi Kono, Akinori Sarai
Methods for Predicting Target Sites of Transcription Factors
--- Akinori Sarai, Hidetoshi Kono, Michael Gromiha, Fabio Pichierri, Kenji Sayano, Misako Aida
Prediction of Cooperative Binding Sites for Multiple Transcription Factors
--- Yifei Wang, Akinori Sarai
Synthesis and Analysis of a Biological System
--- Hiroyuki Kurata, Kazunari Taira, Hiroaki Kitano
Maintenance of Transcription Factor DataBase TFDB
--- Masako Kaizawa, Satoru Watanabe, Takahiro Nobukuni, Masami Horikoshi, Hiroshi Handa, Yoshiyuki Kuchino, Takao Sekiya, Hiroshi Mizushima
WEB Based GENOME Analysis Tools in ALIS Project
--- Kazuo Takehana, Takehiko Ito, Tetsushi Yada, Mika Hirakawa, Hiroko Yamaguchi, Junko Shimada, Katsuji Matsumura, Masako Kuroda
Global Integration of Gene Databases by Eigen-ID Method
--- Tetsuro Toyoda and Akiko Itai
An Object-Protocol Model Multidatabase Query System for Rice and Maize
--- Bal A. Antonio, Zhiwei Fang, Hector Sanchez, Mary Polacco, Su-Shing Chen, Katsumi Sakata, Isamu Ohta, Yoshiyuki Mukai, Ed Coe, Jr., Takuji Sasaki
Unit-Based de novo Drug Design Using a Library of Protein-Ligand Interaction Sites
--- Kiminobu X. Sato, Susumu Goto, Minoru Kanehisa
Synonymous Codon Usage Based on Codon-Anticodon Interaction Energy and Gene Expression Level
--- Mamoru Kato, Akira Suyama
Toward Full 3D Structural Investigation of Intron Splicing in Human Cytochrome P450 2D6 pre-mRNA
--- Wayne Dawson, Kenji Yamamoto
INE: The Rice Genome Sequence Database
--- Yoshiyuki Mukai, Hideki Nagasaki, Baltazar A. Antonio, Katsumi Sakata, Yasumichi Sakai, Takuji Sasaki
Classification of MEDLINE Abstracts
--- Katsutoshi Ibushi, Nigel Collier, Jun'ichi Tsujii
Distances between Completely Matched Tuples in the Modern Gene Sequences
--- Nobuyuki Uchikoga, Akira Suyama
Differences of Translation Termination Sites among the Three Stop Codons
--- Yosuke Ozawa, Satoshi Hanaoka, Rintaro Saito, Masaru Tomita
Receptor Database (RDB) in 1999
--- Kotoko Nakata, Takako Takai, Tsuguchika Kaminuma
Prediction of Secondary Metabolism Pathways from Genomic Information and Compounds Data
--- Atsushi Ogiwara
Analysis of Molecular Evolution in Mitochondorial tRNA Gene Sequences
--- Jun-Ichi Sagara, Kentaro Shimizu
Application to Gene Cluster Analysis of Inductive Inference of Languages over Patterns with Conceptual Hierarchy
--- Yukako Tohsato, Hideo Matsuda, Akihiro Hashimoto
A Combined Query Expansion Approach for Information Retrieval
--- Hisao Imai, Nigel Collier, Jun'ichi Tsujii
Gene Classification Method Based on Batch-Learning SOM
--- Takashi Abe, Shigehiko Kanaya, Makoto Kinouchi, Yoshihiro Kudo, Hirotada Mori, Hideo Matsuda, Carlos Del Carpio, Toshimichi Ikemura
Prediction of Nuclear Localization Signals by HMM
--- Keun-Joon Park, Minoru Kanehisa
Detection of Apoptotic Domains against KEGG Database by the HMM Search
--- Masahiro Hattori, Minoru Kanehisa
MAGEST: ESTs and Gene Expression Pattern Database for Halocynthia roretzi Maternal cDNA
--- Shuichi Kawashima, Takeshi Kawashima, Hiroki Nishida, Kazuhiro W. Makabe, Minoru Kanehisa
Prediction of MHC Class II-Peptide Interaction Using Fuzzy Neural Network
--- Hideki Noguchi, Taizo Hanai, Hiroyuki Honda, Takeshi Kobayashi
Development of an Efficient Data Processing Method for cDNA Microarray and Its Application to Tissue Expression Profiling
--- Koji Kadota, Rika Miki, Yasushi Okazaki, Kentaro Shimizu, Yoshihide Hayashizaki
Distribution of Species Specific Gene Family in Microorganisms
--- Takeshi Ara, Kenji Suzuki, Hideo Matuda, Hirotada Mori
Development of an Automated Identification Program for Three-Dimensional Protein Motifs
--- Hiroaki Kato, Yoshimasa Takahashi, Hidetsugu Abe
Fop Values, Start Codons, SD Sequence Conservation, and Their Correlation to Gene Expression Level
--- Hiroaki Sakai, Chiaki Imamura, Hiroshi Ohno, Takanori Washio, Masaru Tomita
Computer Simulation of Human Erythrocyte Using the E-Cell System
--- Yoichi Nakayama, Ryo Matsushima, Masaru Tomita
AIGNET: A System That Infers Large Scale Genetic Networks
--- Yukihiro Maki, Shoji Watanabe, Yukihiro Eguchi, Daisuke Tominaga, Masahiro Okamoto
Coherent Structural Prediction of a Set of Paralogous Genes on a Eukaryotic Genome
--- Osamu Gotoh
Zipf-Scaling Description in the DNA Sequences
--- Yasuo Yonezawa, Hiroyuki Motohasi
Towards Kinetic Modeling of DNA Replication Using the E-CELL System
--- Fumihiko Miyoshi, Kenta Hashimoto, Yuki Fujita, Reina Matsuo, Youhei Yamada, Masaru Tomita
Kinetic Modelling of Energy Metabolism in Mitochondria
--- Katsuyuki Yugi, Yuko Kanai, Masaru Tomita
A Novel System for Assessment of Macromolecular Interaction in Condensed Phases.
2) Interaction Site Inference by Molecular Shape and Electrostatic Complementarity --- Atsushi Yoshimori, Carlos Adriel Del Carpio Munoz
Generic Gene Expression System for Modeling Complex Gene Regulation Network Using E-CELL System
--- Kenta Hashimoto, Fumihiko Miyoshi, Sae Seno, Masaru Tomita
Recent Improvements in the Automatic System for Protein Tertiary Structure Prediction GAX
--- Carlos Adriel Del Carpio Munoz
Parameter Estimation Mechanism of E-Cell Simulation Environment
--- Yusuke Saito, Kouichi Takahashi, Tomoharu Iwata, Tomohiko Aikawa, Masaru Tomita
Mathematical Analysis of Metabolic Networks Using the E-Cell Simulation Environment
--- Masayuki Okayama, Motohiro Yoneda, Yusuke Saito, Kouichi Takahashi, Masaru Tomita
A High-throughput Gene Discovery System for Arabidopsis Genome Sequencing Project
--- Yasukazu Nakamura, Satoshi Tabata
Evolutionary Emergence of Early-Peptide-Synthesizing RNA Machines by Means of Hierarchical Sociogenesis of tRNA-riboorganisms
--- Koji Ohnishi, Shoken Hokari
Construction of an Integrated Environment for Sequence, Structure, Property and Function Analysis of Proteins
--- Jianghong An, Takao Nakama, Yasushi Kubota, Hiroshi Wako, Akinori Sarai
An Automated Structure Prediction System by Lattice Model for Seven-Helix-Type Membrane Proteins
--- Junichi Uechi, Takatsugu Hirokawa, Makiko Suwa, Shigeki Mitaku
Sequence Analysis for Discrimination of Signal Peptides and Signal Anchor Sequences
--- Masahiro Gomi, Shigeki Mitaku
BioDrive: Simulator for Biochemical and Genetic Networks
--- Koji M. Kyoda, Michiko Muraki, Shugo Hamahashi, Mineo Morohashi, Shuichi Onami, Hiroaki Kitano
Pathlogical Analyses of Enzyme Deficiency in Human Erythrocyte Using E-Cell System
--- Ryo Matsushima, Yoichi Nakayama, Natsumi Noguchi, Hironori Tanaka, Ayako Kinoshita, Masaru Tomita
Discrimination of Drug Sensitivity of Cancer Using cDNA Microarray and Multivariate Statistical Analysis
--- Tatsuhiko Tsunoda, Yoshiaki Hojo, Chikashi Kihara, Norihiko Shiraishi, Osamu Kitahara, Kenji Ono, Toshihiro Tanaka, Toshihisa Takagi, Yusuke Nakamura
Construction and Application of Mouse Full-length cDNA Database
--- Hideaki Konno, Yoshifumi Fukunishi, Toshinori Endo, Yoshihide Hayashizaki
A Database System for the Management and Karyotype Analysis of Chromosome Image Data
--- Akihiro Kawaguchi, Kenji Satou
A System for Displaying Protein Structure Information Based on Sequence Fragment Similarity
--- Shouji Tatsumoto, Kenji Satou
Toward a Data Mining Service from Large and Heterogeneous Genome Databases in GenomeNet
--- Yoshiki Fuseda, Kenji Satou
A Full-Text Search System Covering the Whole GenomeNet
--- Takao Kataoka, Kenji Satou
An Aberrant Splicing Database for Finding Rules of Splice-Site Selection
--- Takashi Yamanaka, Tetsushi Yada, Kenta Nakai
Cross Database Visualization
--- David P. Hansen, Thure Etzold, Guenther Kurapkat
An Ontology for Biological Reaction Events
--- Yuka Tateisi, Tomoko Ohta, Takako Takai, Jun'ichi Tsujii
A Semantically Annotated Corpus from MEDLINE Abstracts
--- Tomoko Ohta, Yuka Tateisi, Nigel Collier, Chikashi Nobata, Katsutoshi Ibushi, Jun'ichi Tsuji
Probe Design for DNA Chip
--- Ken-ichi Kurata, Akira Suyama
Pairwise Alignment on the Loop Structured Computer
--- Zhongmin Li, Yoshio Yoshioka, Toshio Shimizu
Systematic Analyses on Mouse Encyclopedia
--- Toshinori Endo, Yoshifumi Fukunishi, Hideaki Konno, Harukazu Suzuki, Yasuhiro Ozawa, Masayasu Yoshino, Kazuhiro Shibata, Masayoshi Itoh, Piero Carninci, Yasushi Okazaki, Yoshihide Hayashizaki
Chemical Knowledge for Predicting Biosynthetic Pathways of Secondary Metabolites
--- Takaaki Nishioka, Kimito Funatsu
Characterization and Classification of Splicing Patterns
--- Yumi Tamada, Toshio Shimizu
Automatic Extraction of Information on Protein-Protein Interaction from Scientific Literature
--- Toshihide Ono, Haretsugu Hishigaki, Akira Tanigami, Toshihisa Takagi
Interaction-based Analysis of Protein Function and Network
--- Haretsugu Hishigaki, Toshihide Ono, Akira Tanigami, Toshihisa Takagi
PDB-DO:Database of Disorder
--- Kim Lan Sim, Tomoyuki Uchida, Satoru Miyano
A Preliminary Study in Data Management and Visualization of Signal Transduction Pathway data -- Viewing Interaction Data
--- Ken-ichiro Fukuda, Toshihisa Takagi
Computational Analysis of $\chi$ Sequences
--- Reina Uno, Yoichi Nakayama, Kenji Yotsutani, Takehito Mogami, Kazuharu Arakawa, Masaru Tomita
Evaluation of a Method for Predicting Transcription Factors
--- Goro Terai, Takeshi Mizuno, Toshihisa Takagi
Genius: System for Assigning Protein Coding Regions to 3D Structures
--- Makiko Suwa, Henrik T. Yudate, Yasuhiko Masuho, Asaf A. Salamov, Christine A. Orengo, Mark B. Swindells
DDGEL/DDCHIP: Web-Based Systems for Analysis of 2-D Gel Electrophoresis Images and DNA Macro/Micro Array Images
--- Kyotetsu Kanaya, Akira Ohyama, Tatsuya Akutsu, Asao Fujiyama
BESPA: Software Tools for 3D Structure Reconstruction from Single Particle Images of Proteins
--- Yutaka Ueno, Katsutoshi Takahashi, Kiyoshi Asai, Chikara Sato