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Recount: Expectation Maximization Based Error Correction Tool for Next Generation Sequencing Data
Edward Wijaya, Martin Frith, Yutaka Suzuki, Paul Horton |
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Refining Markov Clustering for Protein Complex Prediction by Incorporating Core-attachment Structure
Sriganesh Srihari, Kang Ning, HonWai Leong |
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Cancer Classification Using Single Genes
Xiaosheng Wang, Osamu Gotoh |
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Predicting Protein-Protein Relationships from Literature using Latent Topics
Tatsuya Aso, Koji Eguchi |
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Evaluation of DNA intramolecular interactions for nucleosome positioning in yeast
Michael Fernandez, Satoshi Fujii, Hidetoshi Kono, Akinori Sarai |
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Quality Control and Reproducibility in DNA Microarray Experiments
Andre Fujita, Joao Sato, Fernando daSilva, Maria Galvao, Mari Sogayar, Satoru Miyano |
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Gradient-based Optimization of Hyperparamers for Base-pairing Profile Local Alignment Kernels
Kengo Sato, Yutaka Saito, Yasubumi Sakakibara |
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Structural Insights into the Enzyme Mechanism of a New Family of D-2-hydroxyacid Dehydrogenases, a Close Homolog of 2-ketopantoate Reductase
Sukanta Mondal, Kenji Mizuguchi
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The Prediction of Local Modular Structures in a Co-expression Network Based on Gene Expression Datasets
Yoshiyuki Ogata, Nozomu Sakurai, Hideyuki Suzuki, Koh Aoki, Kazuki Saito, Daisuke Shibata
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Development of a New Meta-score for Protein Structure Prediction from Seven All-atom Distance Dependent Potentials Using Support Vector Regression
Matsuyuki Shirota, Takashi Ishida, Kengo Kinoshita
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Calculation of Protein-ligand Binding Free Energy Using Smooth Reaction Path Generation (SRPG) Method; A Comparison the Explicit Water Model, GB/SA Model and Docking Score Function
Daisuke Mitomo, Yoshifumi Fukunishi, Haruki Nakamura
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Tools for Investigating Mechanisms of Antigenic Variation: New Extensions to VarDB
C.Nelson Hayes, Diego Diez, Nicolas Joannin, Minoru Kanehisa, Mats Wahlgren, CraigE. Wheelock, Susumu Goto |
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Localized Suffix Array and Its Application to Genome Mapping Problems for Paired-End Short Reads
Kouichi Kimura, Asako Koike |
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Comprehensive Analysis of Sequence-structure Relationships In the Loop Regions of Proteins
Shugo Nakamura, Kentaro Shimizu |
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Comparative Analysis of Topological Patterns in Different Mammalian Networks
Bjoern Goemann, AnatolijP. Potapov, Michael Ante, Edgar Wingender |
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An Assessment of Prediction Algorithms for Nucleosome Positioning
Yoshiaki Tanaka, Kenta Nakai |
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A Method for Efficient Execution of Bioinformatics Workflows
Junya Seo, Yoshiyuki Kido, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda |
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Comparative Analysis of Aerobic and Anaerobic Prokaryotes to Identify Correlation between Oxygen Requirement and Gene-Gene Functional Association Patterns
Yaming Lin, Hongwei Wu |
