Mass Spectral Database for Metabolome Analysis
Hisayuki Horai, Kazuhiro Suwa, Masanori Arita, Yoshito Nihei, Takaaki Nishioka

CADLIVE: Integration for Large-Scale Network Data
Yuki Shimokawa, Kazuhiro Maeda, Kentaro Inoue, Hiroyuki Kurata

RIKEN Natural Products Depository (RIKEN NPDepo)
Hideaki Konno, Takeshi Tomiki, Tomio Saito, Masashi Ueki, Takeo Asaoka, Ryuichiro Suzuki, Masakazu Uramoto, Hideaki Kakeya, Hiroyuki Osada

PreSPI: Prediction System for Protein Interaction
Woo-Hyuk Jang, Choon-Oh Lee, Dong-Soo Han

Construction of Candida Albicans Protein Network from Yeast Protein Interactions in System Biology
Chung-Yen Lin,Chieh-Hwa Lin,Chi-Shiang Cho,Fan-Kai Lin,Shu-Hwa Chen,Chao A. Hsiung

ExPlain: Causal Analysis of Gene Expression Data from Promoter Models to Signaling Pathways
Alexander Kel, Holger Karas, Nico Voss, Tagir Waleev, Edgar Wingender

Cell Illustrator3.0: A Platform for Biopathway Modeling and Simulation
Masao Nagasaki, Atsushi Doi, Ayumu Saito, Emi Ikeda, Kazuko Ueno, Euna Jeong, ChristopherJ. Savoie, Satoru Miyano

Ajax for Networks and Ontologies
Kinya Okada, Takahisa Furukawa, Kiyoshi Asai