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List of Accepted Papers |
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Assessing Clustering Results with Reference Taxonomies
Gabriel Valiente |
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A Function-Centric Approach to the Biological Interpretation of Microarray Time-Series
Pablo Minguez, Fatima Al-Shahrour and Joaquin Dopazo |
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The Distribution and Deposition Algorithm for the Multiple Oligo Nucleotide Arrays
Kang Ning and Hon Wai Leong |
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A 3D-Domain Annotated Protein-Protein Interaction Database
Jinn-Moon Yang, Heng-Chu Chen and Yung-Chiang Chen |
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Gene Ontology Annotation by Density and Gravitation Models
Wen-Juan Hou, KevinHsin-Yih Lin and Hsin-Hsi Chen |
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A New Method to Detect Important Residues Using Protein Binding Site Comparison
Keunwan Park and Dongsub Kim |
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Hybrid Gibbs-sampling Algorithm for Challenging Motif Discovery: GibbsDST
Kazuhito Shida |
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Pairwise Alignment with Rearrangements
Vinh Le, Andres Varon and Ward Wheeler
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Development of an Approach for Ab Initio Estimation of Compound-Induced Liver Injury Based on Global Gene Transcriptional Profiles
Xudong Dai, Yudong He, Hongyue Dai, Pek Lum, Christopher Roberts, Jeffrey Waring and Roger Ulrich
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MetaClustering: Discovery of the Different Sample Clusterings in Gene Expression Data
David Venet, Hugues Bersini and Hitoshi Iba
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A Markov Chain Model for Haplotype Assembly from SNP Fragments
Rui-Sheng Wang, Ling-Yun Wu, Xiang-Sun Zhang and Luonan Chen
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Detection and Restoration of Hybridization Troubles in Affymetrix GeneChip Data by Parametric Scanning
Tomokazu Konishi |
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Techniques for Multi-Genome Synteny Analysis to Overcome Assembly Limitations
Arjun Bhutkar, Susan Russo, Temple Smith and William Gelbart |
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Robotic Path Planning and Protein Complex Modeling Considering Low Frequency Intra-molecular Loop and Domain Motions
Carlos A. Del Carpio, Pei Qiang and Eichiro Ichiishi |
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A Generalized Threading Model Using Integer Programming with Secondary Structure Element Deletion
Kyle Ellrott, Jun-tao Guo, Victor Olman and Ying Xu |
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PepSOM: An Algorithm for Peptide Identification by Tandem Mass Spectrometry Based on SOM
Kang Ning, Hoong Kee Ng and Hon Wai Leong |
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Finding Conserved and Non-Conserved Reactions Using a Metabolic Pathway Alignment Algorithm
Jose C. Clemente, Kenji Satou and Gabriel Valiente |
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Modeling and Estimation of Dynamic EGFR Pathway by Data Assimilation Approach using Time Series Proteomic Data
Shinya Tasaki, Masao Nagasaki, Masaaki Oyama, Hiroko Hata, Kazuko Ueno, Ryo Yoshida, Tomoyuki Higuchi, Sumio Sugano and Satoru Miyano |
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RaPiDS: An Algorithm for Rapid Expression Profile Database Search
Paul Horton, Larisa Kiseleva and Wataru Fujibuchi
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>Computational Annotation of Transcription Factor Binding Sites in D. melanogaster Developmental Genes
Vipin Narang, Wing-Kin Sung and Ankush Mittal
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Protein Topology Classification Using Two-Stage Support Vector Machines
Jayavardhana Gubbi, Alistair Shilton, Michael Parker and Marimuthu Palaniswami
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Biomarkers for Epithelial Ovarian Cancers
Pritha Mahata and Kaushik Mahata
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Text Mining and Protein Annotations: the Construction and Use of Protein Description Sentences
Martin Krallinger, Rainer Malik and Alfonso Valencia
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A Gram Distribution Kernel Applied to Glycan Classification and Motif Extraction
Tetsuji Kuboyama, Kouichi Hirata, Kiyoko Aoki-Kinoshita,
Hisashi Kashima and Hiroshi Yasuda
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A Large-Scale Computational Approach to Drug Repositioning
Yvonne Li, Jianghong An and Steven Jones
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