Using the Approach of Comparative Proteomics and Systems Biology to Decipher the Human Protein Network
Chung-Yen Lin, Fan-Kai Lin, Chi-Shyang Cho, Chieh-Hwa Lin, Li-Wei Lai, Chao A. Hsiung

b-Src: A Source-Code Search Engine for Bioinformatics Open-Source Packages
Mitsuteru Nakao, Paul Horton

INOH: Pathways and Ontologies
Noriko Sakai, Tatsuya Kushida, Satoko Yamamoto, Emi Hattori, Hiromi Nakamura, Yuki Yamagata, Yukiko Nakanishi, Toshihisa Takagi, Ken Ichiro Fukuda

Fast Retrieval of Useful Information from Literature Database
Hiroko Matsui, Shigeki Tanishima, Norihiro Akasaka, Takafumi Hayashi, Keiko Oketa, Keizoh Uehara

VECT: The Visual Extraction and Conversion Tool
Hui-Hsien Chou

Toxicogenomics: Novel Computational Strategies for Prediction of Long Term Carcinogenicity
Jochen Koenig, Claire Pallez, Hans Gmuender, Reinhard Doelz, Deepak Thakkar, Frank Staubli

AlignScope : A System for Visualization and Analysis of Whole Genome Alignments
Hee-Jeong Jin, Hye-Jung Kim, Hwan-Gue Cho

KeyMolnet: An Integrated Platform for Analysis of Molecular Networks
Atsushi Nogi, Hiromi Sato, Miki Fukuda, Makoto Shigetaka, Yohei Ozeki, Misa Ogura, Kyoko Nakanishi, Rie Taniguchi, Hisako Kuriki, Nakako Iwasaki, Yoko Inoue, Yoko Wakamatsu, Shizuka Homma, Mikiko Izumi, Yoshinobu Mizoguchi, Yuichi Kikushima, Takeshi Namba, Keiichi Ayabe, Nobuo Tomioka, Akiko Itai

BioRuby+ChemRuby: An Exploratory Software Project
Toshiaki Katayama, Mitsuteru Nakao, Naohisa Goto, Nobuya Tanaka

Cell Illustrator 2.0: A Platform for Biopathway Modeling and Simulation
Masao Nagasaki, Atsushi Doi, Satoru Miyano

Tools for Supporting Computational Experiments on Genomic Object Net
Toshinori Tanaka, Katsuyuki Harada, Hironori Kitakaze, Junkichi Yamanaka, Hiroshi Matsuno, Satoru Miyano