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| Program ver.1205 | |
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--------------------- Monday, December 19, 2005 ---------------------
| Opening Address | |
| 09:00 - 09:10 | |
| Paper Session 1 --- Chair: Tetsuo Shibuya | |
| 09:10 - 09:35 | Qualitatively Predicting Acetylation and Methylation Areas in DNA
Sequences Tho Hoan Pham, Dang Hung Tran, Tu Bao Ho, Kenji Satou, Gabriel Valiente |
| 09:35 - 10:00 | Knowledge-Based Prediction of DNA Atomic Structure from Nucleic Sequence
Marcos J. Araúzo-Bravo, Akinori Sarai |
| 10:00 - 10:25 change  |
Prediction of Functional Modules Based on Gene Distributions in Microbial Genomes Hongwei Wu, Fenglou Mao, Zhengchang Su, Victor Olman, Ying Xu |
| 10:25 - 11:00 | Break |
| Keynote Address --- Chair: Hiroshi Mamitsuka | |
| 11:00 - 12:00 | Chemoinformatics, Drug Design, and Systems Biology Pierre Baldi |
| 12:00 - 13:30 | Lunch |
| 13:30 - 14:30 | Posters(odd number) and Software Demonstrations Session 1 |
| Paper Session 2 --- Chair: Oliver Ebenhöh | |
| 14:30 - 14:55 | Supporting the Curation of Biological Databases with Reusable Text
Mining Olivo Miotto, Tin Wee Tan, Vladimir Brusic |
| 14:55 - 15:20 | Reconstruction of Phylogenetic Relationships from Metabolic Pathways
Based on the Enzyme Hierarchy and the Gene Ontology José Clemente, Kenji Satou, Gabriel Valiente |
| 15:20 - 15:45 | Mass Identification of Chloroplast Proteins of Endosymbiont Origin by Phylogenetic Profiling Based on Organism-Optimized Homologous Protein Groups Naoki Sato, Masayuki Ishikawa, Makoto Fujiwara, Kintake Sonoike |
| 15:45 - 16:15 | Break |
| Paper Session 3 --- Chair: Limsoon Wong | |
| 16:15 - 16:40 | Strategies for Genome Reduction in Microbial Genomes Kishore Sakharkar, Vincent T.K. Chow |
| 16:40 - 17:05 | Reassembly and Interfacing Neural Models Registered on Biological
Model Databases Mihoko Otake, Toshihisa Takagi |
| 17:05 - 17:30 | Objective Measurement of Spindle Orientation in Early
Caenorhabditis Elegans Embryo Shugo Hamahashi, Shuichi Onami |
| 17:30 - 17:55 | Evolution from Possible Primitive tRNA-viroids to Early
Poly-tRNA-derived mRNAs : A New Approach from the Poly-tRNA theory Koji Ohnishi, Madoka Ohshima, Naotaka Furuichi |
--------------------- Tuesday, December 20, 2005 ---------------------
| Paper Session 4 --- Chair: Ying Xu | |
| 09:00 - 09:25 | A Study of Fragment-Based Protein Structure Prediction:
Biased Fragment Replacement for Searching Low-Energy Conformation Sung-Joon Park |
| 09:25 - 09:50 | Comparison of Protein Structures by Multi-Objective Optimization Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Shihua Zhang, Xiang-Sun Zhang |
| 09:50 - 10:15 | Statistical Evaluation of a Bottom-Up Clustering for
Single Particle Molecular Images Yutaka Ueno, Katsunori Isono, Katsutoshi Takahashi, Yukio Shimonohara, Kiyoshi Asai |
| 10:15 - 10:45 | Break |
| Paper Session 5 --- Chair: Koji Tsuda | |
| 10:45 - 11:10 | Inter-Species Validation for Domain Combination Based
Protein-Protein Interaction Prediction Method Woo-Hyuk Jang, Dong-Soo Han, Hong-Soog Kim, Sung-Doke Lee |
| 11:10 - 11:35 | A Graph Theoretical Approach for Analysis of Protein
Flexibility Change at Protein Complex Formation Carlos A. Del Carpio M., Abdul Rajjak Shaikh, Eiichiro Ichiishi, Michihisa Koyama, Momoji Kubo, Kazumi Nishijima, Akira Miyamoto |
| 11:35 - 12:00 | A Fast Protein-Protein Docking Algorithm Using Series
Expansion in Terms of Spherical Basis Functions Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Kentaro Shimizu |
| 12:00 - 13:30 | Lunch |
| Keynote Address --- Chair: Kenta Nakai | |
| 13:30 - 14:30 | Membrane Proteins in Vivo and in Silico: Getting the Best of Two Worlds Gunnar von Heijne |
| Paper Session 6 --- Chair: Gabriel Valiente | |
| 14:30 - 14:55 | Viewing the Proteome from Oligopeptides and Prediction
of Protein Function Hisayuki Horai, Kouichi Doi, Hirofumi Doi |
| 14:55 - 15:20 | Mass Distiributed Clustering : A New Clustering Algorithm
for Repeated Measurements in Gene Expression Data Shinya Matsumoto, Ken-ichi Aisaki, Jun Kanno |
| 15:20 - 15:45 | Diagnosis of Early Relapse in Ovarian Cancer Using Serum
Proteomic Profiling Jung Hun Oh, Jean Gao, Animesh Nandi, Prem Gurnani, Lynne Knowles, John Schorge, Kevin P. Rosenblatt |
| 15:45 - 16:00 | Break |
| 16:00 - 16:30 | JSBi Annual Meeting |
| 16:30 - 18:00 | Posters(even number) and Software Demonstrations Session 2 |
| 18:30 - 21:00 | Banquet (Ball room "Monaco", Inter Continental THE GRAND YOKOHAMA) |
--------------------- Wednesday, December 21, 2005 ---------------------
| Paper Session 7 --- Chair: Tatsuya Akutsu | |
| 09:00 - 09:25 | Reverse Engineering Genetic Networks using Evolutionary
Computation Nasimul Noman, Hitoshi Iba |
| 09:25 - 09:50 | Toward Integration of System Biology Formalism: The Gene
Regulatory Networks Case Raffaella Gentilini |
| 09:50 - 10:15 | Reconstruction of Gene Regulatory Networks under the
Finite State Linear Model Dace Ruklisa, Alvis Brazma, Juris Viksna |
| 10:15 - 10:40 | A Space-Efficient Algorithm for the Constrained Pairwise Sequence Alignment Problem Dan He, Abdullah N. Arslan |
| 10:40 - 12:00 | Posters(even and odd number) and Software Demonstrations Session 3 |
| 12:00 - 13:30 | Lunch |
| Keynote Address --- Chair: Reinhart Heinrich | |
| 13:30 - 14:30 | Cell-Cell Interaction Network That Generates the Skin Pattern of Animal Shigeru Kondo |
| Paper Session 8 --- Chair: | |
| 14:30 - 14:55 change |
Automatic Drawing of Biological Networks Using Cross Cost and Subcomponent Data Mitsuru Kato, Masao Nagasaki, Atsushi Doi, Satoru Miyano |
| 14:55 - 15:20 | Interaction Graph Mining for Protein Complexes Using
Local Clique Merging Xiao-Li Li, Soon-Heng Tan, Chuan-Sheng Foo, See-Kiong Ng |
| 15:20 - 15:45 | Topology of Mammalian Transcription Networks Anatolij Potapov, Nico Voss, Nicole Sasse, Edgar Wingender |
| Closing and Award Ceremony | |
| 15:45 - 16:00 | @ |
E-mail: giw2005@ims.u-tokyo.ac.jp