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| List of Accepted Papers | |
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| Qualitatively Predicting Acetylation and Methylation Areas in DNA Sequences ThoHoan Pham, DangHung Tran, TuBao Ho, Kenji Satou, Gabriel Valiente |
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| Knowledge-based Prediction of DNA Atomic Structure from Nucleic Sequence
MarcosJ. Arauzo-Bravo, Akinori Sarai |
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| Linear-Space Algorithm for the Constrained Pairwise Sequence Alignment
Problem Dan He |
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Supporting the Curation of Biological Databases with Reusable Text
Mining |
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| Reconstruction of Phylogenetic Relationships from Metabolic Pathways
based on the Enzyme Hierarchy and the Gene Ontology Jose Clemente, Kenji Satou, Gabriel Valiente |
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Mass identification of Chloroplast Proteins of Endosymbiont Origin
by Phylogenetic Profiling Based on Homologous Protein Groups |
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| Strategies for Genome Reduction in Microbial Genomes Kishore Sakharkar, VincentT.K. Chow |
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| Reassembly and Interfacing Neural Models Registered on Biological Model
Databases Mihoko Otake, Toshihisa Takagi |
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| Objective Measurement of Spindle Orientation in Early Caenorhabditis
Elegans Embryo Shugo Hamahashi, Shuichi Onami |
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| Evolution from Possible Primitive tRNA-viroids to Early Poly-tRNA-derived
mRNAs : A New Approach from the Poly-tRNA theory Koji Ohnishi, Madoka Ohshima, Naotaka Furuichi |
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| A Study of Fragment-Based Protein Structure Prediction: Biased Fragment
Replacement for Searching Low-energy Conformation Sung-Joon Park |
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| Comparison of Protein Structures by Multi-Objective Optimization Luonan Chen, Ling-Yun Wu, Ruiqi Wang, Shihua Zhang, Xiangsun Zhang |
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| Statistical Evaluation of a Bottom-Up Clustering for Single Particle
Molecular Images Yutaka Ueno, Katsunori Isono, Katsutoshi Takahashi, Yukio Shimonohara, Kiyoshi Asai |
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| Inter-Species Validation for Domain Combination Based Protein-Protein
Interaction Prediction Method Woo-Hyuk Jang, Dong-Soo Han, Hong-Soog Kim, Sung-Doke Lee |
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| A Graph Theoretical Approach for Analysis of Protein Flexibility Change
at Protein Complex Formation Carlos A. DelCarpioM, AbdulRajjak Shaikh, Eiichiro Ichiishi, Akira Miyamoto |
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| A Fast Protein-Protein Docking Algorithm Using Series Expansion in
Terms of Spherical Basis Functions Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Kentaro Shimizu |
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| Viewing the Proteome from Oligopeptides and Prediction of Protein Function Hisayuki Horai, Kouichi Doi, Hirofumi Doi |
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| Mass Distiributed Clustering : A New Clustering Algorithm for Repeated
Measurements in Gene Expression Data Shinya Matsumoto, Kenichi Aisaki, Jun Kanno |
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| Diagnosis of Early Relapse in Ovarian Cancer Using Serum Proteomic JungHun Oh, Jean Gao, Animesh Nandi, Prem Gurnani, Lynne Knowles, John Schorge, Kevin Rosenblatt |
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| Reverse Engineering Genetic Networks using Evolutionary Computation Nasimul Noman, Hitoshi Iba |
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| Toward Integration of System Biology Formalism: The Gene Regulatory
Networks Case Raffaella Gentilini |
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| Reconstruction of Gene Regulatory Networks under the Finite State Linear
Model Dace Ruklisa, Alvis Brazma, Juris Viksna |
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| Automatic Drawing of Biological Networks Using Cross Cost and Subcomponent
Data Mitsuru Kato, Masao Nagasaki, Atsushi Doi, Satoru Miyano |
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Prediction of Functional Modules Based on Gene Distributions in Microbial
Genomes |
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| Interaction Graph Mining for Protein Complexes Using Local Clique Merging Li Xiao-li, Tan Soon-Heng, Foo Chuan-Sheng, Ng See-Kiong |
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| Topology of Mammalian Transcription Networks Anatolij Potapov, Nico Voss, Nicole Sasse, Edgar Wingender |
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