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| List of Accepted Papers
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 | IRIS: Intermolecular RNA Interaction Search
Dmitri D. Pervouchine |
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| Intercellular Communications Induced by Random Fluctuations
Tianshou Zhou, Luonan Chen, Kazuyuki Aihara |
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| Knowledge Representation Model for Systems-Level Analysis of Signal Transduction Networks
Dong-Yup Lee, Ralf Zimmer, Sang-Yup Lee, Daniel Hanisch, Sunwon Park |
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| Computational methods for the analysis of differential conservation in groups of similar DNA sequences
Nikola Stojanovic |
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| A novel graph-based similarity measure for 2D chemical structures
Le Si Quang, Ho TuBao, Phan T.T Hang |
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| A Method for Clustering Gene Expression Data based on Graph Structure
Shigeto Seno, Reiji Teramoto, Yoichi Takenaka, Hideo Matsuda |
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| PreSPI: Design and Implementation of Protein-Protein Interaction Prediction Service System
Dong-Soo Han, Hong-Soog Kim, Woo-Hyuk Jang, Sung-Doke Lee, Jung Keun Suh |
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| Predicting Protein Secondary Structure by a Support Vector Machine Based on a New Coding Scheme
Long-Hui Wang, Juan Liu, Yan-Fu Li, Huai-Bei Zhou |
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| Statistical And Integrative Approach For Constructing Biological Network Maps
Hiroyuki Kurata, Natsumi Shimizu, Kanako Misumi |
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| Kernel mixture survival models for identifying cancer subtypes, predicting patient's cancer types and survival probabilities
Tomohiro Ando, Seiya Imoto, Satoru Miyano |
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| Ontological integration of data models for cell signaling pathways
Takako Takai-Igarashi, Riichiro Mizoguchi |
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| Inference of Gene Regulatory Networks by means of Dynamic Differential Bayesian Networks and Nonparametric Regression
Naoya Sugimoto, Hitoshi Iba |
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| Splicing Profile Based Protein Categorization between Human and Mouse Genomes by use of the DDBJ Web Services
Johannes Vastermark, Yasumasa Shigemoto, Takashi Abe, Hideaki Sugawara |
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| Support Vector Machines with Profile-Based Kernels for Remote Protein Homology Detection
Steven Busuttil, John Abela, Gordon J. Pace |
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| Increasing Feasibility of Optimal Gene Network Estimation
Annika Hansen, Sascha Ott, Georgy Koentges |
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| Using protein motif combinations to update KEGG pathway maps and orthologue tables
Frederic Nikitin, Bastien Rance, Masumi Itoh, Minoru Kanehisa, Frederique Lisacek |
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| Recovering genetic regulatory networks from micro-array data and location analysis data using large scale structure learning algorithms
Fan Li, Yiming Yang |
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| Mining yeast transcriptional regulatory modules from factor DNA-binding sites and gene expression data
Tho Hoan Pham, Kenji Satou, Tu Bao Ho |
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| Computational prediction of operons in Synechococcus sp. WH8102
Xin Chen, Zhengchang Su, Ying Xu, Tao Jiang |
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| General-purpose Search Techniques for Genomic Text
Abhijit Chattaraj, Hugh E. Williams, Adam Cannane |
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| An extension and novel solution to the (l,d)-motif challenge problem
Mark P Styczynski, Kyle L Jensen, Isidore Rigoutsos, Gregory N Stephanopoulos |
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| Comprehensive identification of “druggable” protein ligand binding sites
Jianghong An, Maxim Totrov, Ruben Abagyan |
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| StructMiner: A Tool for Alignment and Detection of Conserved Secondary Structure
Qian Yang, Mathieu Blanchette |
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| Systematic DNA-binding domain classification of transcription factors
Philip Stegmaier, Alexander E. Kel, Edgar Wingender |
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| Novel consistent modeling of signaling pathways and its implementation in the TRANSPATH database
Claudia Choi, Torsten Crass, Alexander Kel, Olga Kel-Margoulis, Mathias Krull, Susanne Pistor, Anatolij Potapov, Nico Voss, Edgar Wingender |
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| Graphical Approach to Weak Motif Recognition
Xiao Yang, Jagath C. Rajapakse |
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| Domain discovery method for topological profile searches in protein structures
Juris Viksna, David Gilbert, Gilleain Torrance |
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| RNA 3D Structure Prediction: Assessing RNA 3D Structure Similarity from 2D Structure Similarity
Carlos A. Del Carpio Munoz |
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| Architecture of A Grid-enabled Research Platform with Location-Transparency for Bioinformatics
Yoshiyuki Kido, Susumu Date, Shingo Takeda, Shoji Hatano, Juncai Ma, Shinji Shimojo, Hideo Matsuda |
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