List of Accepted Posters
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T i t l e
|
A u t h o r (s) |
| FAMSBASE: Modeling Database of 161 Genomes | Mitsuo Iwadate, Kazuhiko Kanou, Daisuke Takaya, Katsuichiro Komatsu, Mayuko Takeda-Shitaka, Hideaki Umeyama |
| Pathways/Networks to Syndrome X | Tsuguchika Kaminuma, Masumi Yukawa, Naomi Komiyama, Kotoko Nakata, Hiroki Momose, Yoshitomo Tanaka, Hiroshi Tanaka |
| Detection of genes with tissue-specific patterns using Akaike's Information Criterion | Koji Kadota, Katsutoshi Takahashi |
| Analysis of 3'/5' ratio of Actin and Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) | Yasuo Oshima, Akio Fujimura |
| Gclust: genome-wide clustering of protein sequences for identification of photosynthesis-related genes resulting from massive horizontal gene transfer | Naoki Sato |
| Current status of Rice Annotation Database (RAD) | Yuichi Ito, Isamu Ohta, Yoshiyuki Mukai, Baltazar A. Antonio, Michie Shibata, Mayu Yamamoto, Yukiyo Ito, Katsumi Sakata, Nobukazu Namiki, Takashi Matsumoto, Takuji Sasaki |
| RiceBLAST: A Comprehensive Homology Search for Rice Specific Sequences | Yoshiaki Nagamura, Baltazar A. Antonio, Hisataka Numa, Ikuo Horiuchi, Manabu Akimoto, Shigehiro Honda, Koichi Sugioka, Nana Matoba, Yuji Shimizu, Katsuaki Watanabe, Takuji Sasaki, Kenichi Higo |
| Gene-Distribution Patterns on Cyanobacterial Genomes | Nobuyoshi Sugaya, Hiroo Murakami, Makihiko Satoh, Sachiyo Aburatani, Katsuhisa Horimoto |
| Computational models of calcium signaling in the pancreas - temporal and spatial regulations | Kojiro Yano, Ole H. Petersen, Alexei V. Tepikin |
| Model Analysis of Helper T Cell Differentiation | Satoshi Yamada, Akihiko Yoshimura |
| Open Ontology Forge: A Tool for Ontology Creation and Text Annotation Applied to the Biomedical Domain | Ai Kawazoe, Tony Mullen, Koichi Takeuchi, Tuangthong Wattarujeekrit, Nigel Collier |
| Artificial Neural Network Model for Prediction of Childhood Allergic Asthma Using Single Nucleotide Polymorphism Data | Yasuyuki Tomita, Shuta Tomida, Yoichi Suzuki, Taro Shirakawa, Takeshi Kobayashi, Hiroyuki Honda |
| Gene Screening Method for Prognostic Prediction Using Projective ART Model | Hiro Takahashi, Takeshi Kobayashi, Hiroyuki Honda |
| Improvements in ProMode (a database of normal mode analyses of proteins) | Hiroshi Wako, Masaki Kato, Shigeru Endo |
| Inferring Strengths of Protein-Protein Interactions Using Linear Programming | Morihiro Hayashida, Nobuhisa Ueda, Tatsuya Akutsu |
| Operon Prediction by DNA microarray: an Approach with a Bayesian Network Model | Hitoshi SHIMIZU, Shigeyuki OBA, Shin ISHII |
| Heterogeneity in synonymous codon usage among genes of diverse bacterial genomes | Haruo Suzuki, Rintaro Saito, Masaru Tomita |
| Comparative Analysis Workbench for Genetic Networks | Pan-Gyu Kim, Kyung-Shin Lee, Hwan-Gue Cho, Seon Hee Park, Miyoung Shin, Eun Mi Kang |
| OBIYagns: A biochemical simulator in Grid environment | Shuhei Kimura, Takuji Kawasaki, Mariko Hatakeyama, Takashi Naka, Fumikazu Konishi, Akihiko Konagaya |
| CADLIVE Automatic Visualizing System for Large-Scale Biochemical Maps | Weijiang Li, Hiroyuki Kurata |
| Identifying Obscure Periodic Patterns in Genomic DNA Sequence | Hiroo Murakami, Natsuhiro Ichinose, Tetsushi Yada, Sachiyo Abratani, Nobuyoshi Sugaya, Makihiko Sato, Katsuhisa Horimoto |
| Genome-Scale Detection of Tandemly-Duplicated Gene Structures | Keisuke Onishi, Hao Zhang, Takuro Tamura, Takashi Gojobori, Shintaroh Ueda |
| Conservation of DNA curvature signals in gene regulatory regions | Ruy Jauregui, Enrique Merino |
| Prediction of Biochemical Reactions using Genetic Programming | Masahiro Sugimoto, Shinichi Kikuchi, Masaru Tomita |
| Genome-Wide Functional Classification/Identification of Prokaryotic Transmembrane Proteins Based on Transmembrane Topology Similarity | Masafumi Arai, Kosuke Okumura, Masanobu Satake, Toshio Shimizu |
| Analysis of Tandem Repeats Detected in Prokaryotic Genomes | Hikaru Munakata, Abulimiti Aimaiti, Akito Taneda, Kenji Oosawa, Toshio Shimizu |
| Prediction of Interfaces for GPCR Oligomer | Wataru Nemoto, Hiroyuki Toh |
| Prediction of Protein Interaction Sites and Protein-Protein Interaction Pairs using Support Vector Machines | Asako Koike, Toshihisa Takagi |
| Correlated Mutation Analysis of C2H2 Zinc Finger Domains | Takafumi Nagano, Makiko Suwa, Kiyoshi Asai |
| Structure-Thermodynamic Relationship in Protein-DNA Binding: Heat Capacity Changes | Hatsuho Uedaira, Hidetoshi Kono, Prabakaran Ponraj, Koji Kitajima, Akinori Sarai |
| Deterministic and Stochastic Models Analyze the Robustness of Circadian Rhythms | Yoshiyuki Sumida, Fumitaka Ohnishi, Hiroyuki Kurata |
| Integration of Postgenomic Data for GMA to Simulate a Metabolic Circuit | Takayuki Tanaka, Hiroyuki Kurata |
| NAMIHEI: A Novel Algorithm for Genomic Polymorphism Detection from DNA Sequence | Go Maeno, Tomohiro Isobe, Yuko Tokoro, Yuki Ejiri, Nobutaka Mitsuhashi, Tokuki Sakiyama, Ken Aoshima |
| Development of Lossless Compression Techniques for Biology Information and its Application for Bioinformatics Database Retrieval | Toshio Modegi |
| Estimation of the number of orphan genes in the genome sequences | Satoshi Fukuchi, Ken Nishikawa |
| Enhancement of the SOAP Server in DDBJ Web services to Process Tsunami of Biological Data | Yasumasa Shigemoto, Masahito Yamaguchi, Satoru Miyazaki, Hideaki Sugawara |
| Analysis of Horizontal Gene Transfer and Clustering of Microbial ORFs by use of a GRID environment | Hideaki Sugawara, Yoji Nakamura, Kazuho Ikeo, Satoru Miyazaki, Takashi Gojobori, Kenji Satou, Akihiko Konagaya |
| Integrative Method for Identifying Combinatorial Regulation of Transcription Factors | Mamoru Kato, Naoya Hata, Nila Banerjee, Michael Q. Zhang |
| Pedigree Analysis Programme GTree 1.2 and its Application | Daisuke Ogino, Shiro Mori, Masato Nose, Hideki Sawada |
| Statistical Analysis of the Relationship between Gene Expression and Location | Sachiyo Aburatani, Nobuyoshi Sugaya, Hiroo Murakami, Makihiko Sato, Katsuhisa Horimoto |
| Statistical analysis of symmetric exon sets in eukaryotic genes | Yiyu Jia, Chee Keong Kwoh, Meena K. Sakharkar, Pandjassarame Kangueane |
| Self-Organizing Clustering: A Novel Non-Hierarchical Method for Clustering Large Amount of DNA Sequences | Kou Amano, Hidemitsu Nakamura, Hiroaki Ichikawa |
| Development of HocDB (Homology-based Clustering DataBase), a sequence classification system for database searching | Motokazu Ishikawa, Yoshinori Sato, Hiroyuki Toh |
| IMPORT - Integrated Massive Probe's Optimal Recognition Tools | Cheng Tao Wu, Chung Ya Liao, Hung Ju Su, Shiu Chieh Lan, Yu Yu Lin, Yu Ching Chang, |
| Simulation of Drosophila Boundary Cell Formation inForced-Expression of NotchΔE | Rie Yamane, Junko Umezaki, Hiroshi Matsuno, Ryutaro Murakami, Naoyuki Yamasaki, Satoru Miyano |
| Xenopus Cell Cycle Pathway for Simulating Cell Division Processes by Genomic Object Net | Mika Matsui, Sachie Fujita, Shun-ichi Suzuki, Hiroshi Matsuno, Satoru Miyano |
| Extracting Information on Protein-Protein Interactions from Biological Literature Based on Machine Learning Approaches | Kazunari Sugiyama, Kenji Hatano, Masatoshi Yoshikawa, Shunsuke Uemura |
| An algorithm to identify abbreviations from MEDLINE | Hiroko Ao, Toshihisa Takagi |
| Significance test of clusters in gene expression profile data | Natsuko Kawase, Shigeyuki Oba, Shin Ishii |
| Identifying Potential Regulatory Sequences of Alternative Splicing | Hitomi Itoh, Takanori Washio, Masaru Tomita |
| Bioinformatics Studies on Transmembrane Strand Proteins | M. Michael Gromiha, Shandar Ahmad, Makiko Suwa |
| Features of Gene Extraction by Nonlinear Support Vector Machines in Gene Expression Analysis | Daisuke Komura, Hiroshi Nakamura, Shuichi Tsutsumi, Hiroyuki Aburatani, Sigeo Ihara |
| Towards Splicing Pattern Detection Based on cDNA Sequences | Tomohiro Yasuda, Koichi Kimura, Tetsuo Nishikawa |
| Computer simulation system for modeling of reaction-diffusion of biochemical pathways | Ryuzo Azuma, Yoshiki Yamaguchi, Tetsuji Kitagawa, Akihiko Konagaya |
| A Prototype of PubMed Central Japan | Hideaki Sugawara, Takashi Gojobori, Takeshi Konno, Yasumasa Shigemoto, Masahito Yamaguchi |
| Refinement of Comparative-Modeling Structures by Multicanonical Molecular Dynamics | Wei Cao, Tohru Terada, Shugo Nakamura, Kentaro Shimizu |
| SNPAnalyzer: web-based workbench for the SNPs analysis | Jihho Yoo, Bonghee Seo, Yangseok Kim |
| Support Vector Machines for Predicting Protein-Protein Interactions | Shinsuke Dohkan, Asako Koike, Toshihisa Takagi |
| Omic Space and Totalomics | Tetsuro Toyoda, Akiyoshi Wada |
| Space-Gene : Microbial Gene Prediction System based on Linux Clustering | Jong-won Chang, Chungoo Park, Dong Soo Jung, Mi-hwa Kim, Jae-woo Kim, Seung-sik Yoo, Hong Gil Nam |
| Predict Functionally Important Residues Responsible for Estrogen Receptor Subtype Divergence | Feng Wang, Hirohisa Kishino, Yasuhiko Wada |
| Development of a New Gene-Network Estimation System | Shigeyuki Mitsui, Hiroya Nobori, Tuyoshi Takada, Kunihiro Kishida, Yoshiki Miura, Hiroshi Ikawa |
| Language Resource and Rule Construction for Biological Named Entity System using UMLS | Hyun-Sook Lee, Tae-Hyun Kim, Soo-Jun Park, Seon-Hee Park |
| The Translated Region Inspector for cDNA Sequences | Kouichi Kimura, Tetsuo Nisikawa, Keiichi Nagai, Sumio Sugano, Nobuo Nomura, Takao Isogai |
| Mapping the Genome Sequences on Self Organizing Maps | Hiroshi Dozono, Hisao Tokushima, Yoshio Noguchi |
| Disease-associated Genes Extraction from Literature Database | Takayuki Takahata, Yasuhiro Kouchi, Kaoru Asano, Toshihisa Takagi |
| In Silico Prediction of Peroxisomal Proteins in Mouse | Igor V. Kurochkin, Christian Schonbach, Akihiko Konagaya |
| Drug Screening of GPCR using Active Learning | Yukiko Fujiwara, Yoshiko Yamashita, Tsutomu Osoda, Minoru Asogawa, Shun Doi, Masaaki Asao, Emi Kushiyama, Kazuya Nakao, Masataka Kuroda, Kazuteru Wada, Takanori Ogaru, Chiaki Fukushima, Ryo Shimizu |
| Development of Construction and Management Tools for Biological Named Entity Dictionary | Hyunchul Jang, Taehyun Kim, Hyunsook Lee, Soojun Park, Seonhee Park |
| Developing Genome-Scale Prediction System for Transcription Factors and Their Targets | Akinori Sarai, Shandar Ahmad, Michael M. Gromiha, M. D. Shaji Kumar, Abdulla Bava, Hidetoshi Kono |
| Protein-Ligand Interactions: ProLINT database and QSAR Analysis | Shandar Ahmad, Kouji Kitajima, Samuel Selvaraj, Hideo Kubodera, Shinji Sunada, Jianghong An, Akinori Sarai |
| Development of Residue look-up tables and Graphical Representation of Solvent Accessibility in Proteins | Shandar Ahmad, Jung-Ying Wang, M. Michael Gromiha, Hamed Fawareh, Akinori Sarai |
| Automatic Extraction of Expression-related Features Shared by a Given Group of Genes | Takuya Oyama, Mikio Yoshida, Satoshi Kamegai, Kagehiko Kitano, Fumihito Miura, Noriko Kawaguchi, Miyuki Onda, Kenji Satou, Takashi Ito |
| SIMDEB-ECS : E-CELL static model debugger | Naota Ishikawa, Iriko Kaneko, Toshikazu Ebisuzaki |
| Current Status of ProNIT: Thermodynamic Database for Protein-Nucleic Acid Interactions | M.D. Shaji Kumar, Ponraj Prabakaran, M. Michael Gromiha, Hatsuho Uedaira, Kouji Kitajima, Akinori Sarai |
| Automatically Finding Good Clusters with Seed K-means | Miyoung Shin, Eun Mi Kang, Seon Hee Park |
| Newly identified motifs within PAS domains of filamentous cyanobacteria | Rei Narikawa, Shinobu Okamoto, Masahiko Ikeuchi, Masayuki Ohmori |
| M3 : Merging module model for a network with scale-free properties and modularity | Kazuhiro Takemoto, Chikoo Oosawa |
| Latest developments in ProTherm: Thermodynamic Database for Proteins and Mutants | K. Abdulla Bava, M. Michael Gromiha, Hatsuho Uedaira, Koji Kitajima, Akinori Sarai |
| Crosstalk between metabolic and regulatory pathways | Min Kyung Kim, Hyun Seok Park, Seong Joon Yoo |
| Prediction of MHC Class I Binding Peptides Using an Ensemble Learning Approach | Nicolas Majeux, Keiko Udaka, Hiroshi Mamitsuka |
| Prediction of Residues in Protein-RNA Interaction Sites by Neural Networks | Euna Jeong, I-Fang Chung, Satoru Miyano |
| Distribution of chromophore-binding GAF domains in genome sequence | Shinobu Okamoto, Masayuki Ohomori |
| Protein Classification via Kernel Matrix Completion | Taishin Kin, Tsuyoshi Kato, Koji Tsuda, Kiyoshi Asai |
| A System for Visualizing Gene Expressions using Metabolic Networks | Ryoko Tamaru, Toshiyuki Amagasa, Shigehiko Kanaya, Shunsuke Uemura |
| UniPath: A Knowledge Representation System for Biological Pathways | Min Su Lee, Seung Soo Park, Hyun Seok Park |
| Detect of Novel Alternative Form at Development Stages in Brain | SungHun Lee, MyungGuen Chung, SungHee Park, SooJun Park, SeonHee Park |
| Finding Signiffcant Patterns Characterizing Types of Alternative Splicing | Hiroki Sakai, Osamu Maruyama |
| An integrated database of interaction between human proteins and commonly used drugs | Masashi Nemoto, Kenji Araki, Ken Horiuchi, Motoi Tobita, Tetsuo Nishikawa |
| Image Preprocessing For cDNA microarray Using Deconvolution Method | Hyo Jung Ban, Myungguen Chung, Yong Sung Lee, Jin Hyuk Kim, Young Seek Lee |
| A Comparative Study on Formal Grammars for Pseudoknots | Yuki Kato, Hiroyuki Seki, Tadao Kasami |
| PFcDNA: Prediction of a full length gene from partial sequence | SooYoung Cho, Myungguen Chung, Seung-baek Han, Hyun Kim, YoungSeek Lee |
| Prediction of transcription factor binding site by extracting common sequences | Myung Eun Lim, Jeong Seop Sim, Myung Geun Chung, Sun Hee Park |
| Translational Efficiency Prediction Using Structural Learning Method | Koya Mori, Rintaro Saito, Shinichi Kikuchi, Masaru Tomita |
| Parallelized Simulation of Molecular Dynamics with a Special-Purpose Computer: MDGRAPE-2 | Naoki Takada, Noriyuki Futatsugi, Atsushi Suenaga, Tetsu Narumi, Noriaki Okimoto, Hidenori Hirano, Atsushi Kawai, Kenji Yasuoka, Toshikazu Ebisuzaki, Makoto Taiji, Akihiko Konagaya |
| Microarray Visualization System on the G-language GAE | Yohei Yamada, Kazuharu Arakawa, Hirotada Mori, Masaru Tomita |
| BIOSILICO: A Biochemical Database Retrieval System | Jin Sik Kim, Ji Hoon Jun, Yong Wook Kim, Sujin Chae, Mira Roh, Yong Ho In, Sang Yup Lee |
| On the Accuracy of Transmembrane Segment Prediction of Helical Integral Membrane Proteins | Shin Tanimoto, Gautam Basu, Takeshi Kawabata, Nobuhiro Go |
| An Efficient Pathway Search using an Indexing Scheme for RDF | Akiyoshi MATONO, Toshiyuki AMAGASA, Masatoshi YOSHIKAWA, Shunsuke UEMURA |
| Statistical Significance of Tree Similarity Scores | Kiyoko F. Aoki, Atsuko Yamaguchi, Yasushi Okuno, Tatsuya Akutsu, Nobuhisa Ueda, Minoru Kanehisa, Hiroshi Mamitsuka |
| Identification of non-coding RNAs in the Escherichia coli genome using Sequence Specificity Index (SSI) | Nozomu Yachie, Koji Numata, Rintaro Saito, Akio Kanai, Masaru Tomita |
| A Consensus Transmembrane Topology Prediction Method of High-Reliability | Jun-Xiong Xia, Toshio Shimizu |
| Comprehensive Functional Identification of Transmembrane Proteins Using the BTP Method | Yasuhito Inoue, Toshio Shimizu |
| A cDNA Evaluation System for Highly Efficient Sequencing of Splicing Variant cDNAs | Jun-ichi Yamamoto, Naoto Hatano, Kenji Araki, Hiroshi Makita, Kouichi Kimura, Ai Wakamatsu, Shizuko Ishii, Tetsuo Nishikawa, Takao Isogai |
| CADLIVE-Based Analysis for the Budding Yeast Cell Cycle | Natsumi Shimizu, Shunsuke Yamamichi, Hiroyuki Kurata |
| Large Scale Analysis of Transcriptional and TranslationalControl Mechanism in Human Ribosomal Proteins | Kyota Ishii, Tamayo Uechi, Takanori Washio, Maki Yoshihama, Naoya Kenmochi, Masaru Tomita |
| Extraction of Biological Contexts and Ontological DAG Structures from Gene Groups using GO Term Distribution | Sung Geun Lee, Jae Seong Yang, Wan Seon Lee, Miyoung Shin, Yang Seok Kim |
| An algorithm for classification of alternative splicing and transcriptional initiation and its genome-wide application | Hideki Nagasaki, Makiko Suwa, Osamu Gotoh |
| Maximum Likelihood Superposition of Protein Structures | Tsuyoshi Kato, Koji Tsuda, Kentaro Tomii, Kiyoshi Asai |
| Real-Time Mapping System of cDNAs and Genomes using Grid Computing | Yusuke Saito, Manabu Gomi, Hideo Matsuda, Naohisa Goto, Ken Kurokawa, Teruo Yasunaga |
| A new method for characterizing functionally-unknown proteins using specific amino acid frequency and periodicity at the proteome level | Kosuke Fujishima, Jun Imoto, Akio Kanai, Masaru Tomita |
| Automatic generation of cell-wide pathway model from complete genome | Kazuharu Arakawa, Yohei Yamada, Hiromi Komai, Kosaku Shinoda, Yoichi Nakayama, Masaru Tomita |
| Profile-Profile Comparison based on Hidden Markov Model Profiles | Makihiko Sato, Nobuyoshi Sugaya, Hiroo Murakami, Sachiyo Aburatani, Katsuhisa Horimoto |
| Analysis of Gene Regulation Network by Nuclear Receptor PPAR | Hiroki Momose, Tsuguchika Kaminuma, Yoshitomo Tanaka, Kotoko Nakata, Hiroshi Tanaka |
| Novel types of two-domain multi-copper oxidases: Possible missing links in the evolution | Kensuke Nakamura, Takeshi Kawabata, Kei Yura, Nobuhiro Go |
| Identification of Regulation Networks of Lipid Metabolism by Nuclear Receptors | Yoshitomo Tanaka, Tsuguchika Kaminuma, Hiroki Momose, Kotoko Nakata, Hiroshi Tanaka |
| TTOP : a system for evolutionary annotation of phylogenic trees | Srinesh Kundu, Masato Hagiwara, Kanako O. Koyanagi, Tadashi Imanishi, Takeshi Itoh |
| Algorithms for Computing an Optimal Protein Threading with Profiles and Distance Restraints | Tatsuya Akutsu, Morihiro Hayashida, Etsuji Tomita, Jun’ichi Suzuki, Katsuhisa Horimoto |
| Characterization of one-pass and full-length sequences of oligo-capping cDNA clones by genome mapping | Tetsuo Nishikawa, Kouichi Kimura, Tomohiro Yasuda, Jun-ichi Yamamot, Ai Wakamatsu, Shizuko Ishii, Masashi Nemoto, Jun-ichi Uechi, Yutaka Suzuki, Keiichi Nagai, Sumio Sugano, Nobuo Nomura, Takao Isogai |
| Clustering Method Based on Onset and Cessation of Gene Expression | Kazumi Hakamada, Taizo Hanai, Masahiro Okamoto |
| 3-D Visualization Software of a Gene Regulatory Network | Kouichi Okada, Nasimul Noman, Naoki Hosoyama, Hitoshi Iba |
| PLOC: Prediction of Subcellular Location of Proteins | Keun-Joon Park, Minoru Kanehisa, Yutaka Akiyama |
| Prediction from sequence to structure at oligonucleotide level by MD simulations | Manish Biyani, Koichi Nishigaki |
| Ontology Using Role Concept Recognized on Biological Relationships and Its Application | Masaru Takeya, Hisataka Numa, Koji Doi |
| Human Full-length Pre-mRNA Sequence Dataset for Computational Gene Prediction and Alternative Splicing Analysis | Masahiko Mizuno, Osamu Gotoh, Makiko Suwa |
| Quantifying the Spiral Leaf Trait of Arabidopsis from the 3D Shape Model towards Computational Phenomics | Eli Kaminuma, Naohiko Heida, Yuko Tsumoto, Minami Matsui, Tetsuro Toyoda, Akihiko Konagaya |
| GOODIES: GO based Data Mining Tool for Characteristic Attribute Interpretation on a Group of Biological Entities | Sung Geun Lee, Wan Seon Lee, Yang Seok Kim |
| Evaluation System for Information Retrieval in Biomedical Field | Yasunori Yamamoto, Toshihisa Takagi |
| Molecular Modeling for Generation of Structural and Molecular Electronic Descriptors for QSAR using Quantum Mechanical Semiempirical and ab initio methods | Mohd. Shahid Khan, Zahid H. Khan |
| On improving protein functional identification in pattern recognition based on continuous density HMM | Dooil Kim, Dae-Sil Lee |
| G-language Genome Analysis Environment Version 2 | Hayataro Kouchi, Kazuharu Arakawa, Ryo Hattori, Yohei Yamada, Yusuke Kobayashi, Atsuko Kishi, Kosaku Shinoda, Masaru Tomita |
| Inner Residues in the Transmembrane Helix Bundle are More Conservative | Sukenobu Konishi, Takuhiro Nishio, Toshio Shimizu |
| Development of Bacteria Analysis System v.2 on the G-language Genome Analysis Environment | Daisuke Kyuma, Kazuharu Arakawa, Koya Mori, Masaru Tomita |
| Dynamics of Reprssilator: From Noise to Coherent Oscillation | Tomohiro Ushikubo, Wataru Inoue, Masaki Sasai |
| Regulator identification by expression profiles of transcriptional factor mutants and promoter sequence in Bacillus subtilis | Nobuyuki Fujii, Joe Akitomi, Kazuo Kobayashi, Naotake Ogasawara, Shigehiko Kanaya |
| Improvement in accuracy of gene prediction of human cDNA sequences | Fusano Todokoro, Takeshi Itoh, Chisato Yamasaki, Hiroaki Kawashima, Tadashi Imanishi, Takashi Gojobori |
| Scalable BLAST service in OBIGrid environment | Fumikazu Konishi, Yukimasa Shiroto, Ryo Umetsu, Akihiko Konagaya |
| Systematic analyses of P-loop containing nucleotide triphosphate hydrolase superfamily based on sequence, structure and function | Yoichi Kawamura, Kiyoshi Asai, Shin Ishii, Nozomi Nagano |
| Detection of tissue specific genes by putative regulatory motifs in Human promoter sequences | Katsuhiko Murakami, Toshio Kojima, Yoshiyuki Sakaki |
| Graph Complexity of Chemical Compounds in Biological Pathways | Atsuko Yamaguchi, Kiyoko F. Aoki, Hiroshi Mamitsuka |
| Prognosis prediction by microarray gene expression using Support Vector Machine | Chihoko Tago, Taizo Hanai, Masahiro Okamoto |
| On Visualization, Screening, and Classification ofCell Cycle-Regulated Genes in Yeast | Henry Horng-Shing Lu, Han-Ming Wu |
| Detection of processed pseudogenes based on cDNA mapping to the human genome | Hiroaki Sakai, Kanako O. Koyanagi, Takeshi Itoh, Tadashi Imanishi, Takashi Gojobori |
| Mapping of Artificial Nucleosome Positioning Sequences to the Saccharomyces cerevisiae Genome | Vorathaya Tantoolvesm, Yoichi Takenaka, Satoshi Harashima, Hideo Matsuda |
| Splice Variant Search with Gene Expression Data | Tadashi Kadowaki, Satoshi Shiojima, Gozoh Tsujimoto |
| A Method for Normalization of Gene Expression Data | Makoto Kano, Hisashi Kashima, Tetsuo Shibuya, Kaori Ide, Aiko Kashihara, Noriko Nakagawa, Seiki Kuramitsu, Mariko Hatakeyama, Akihiko Konagaya |
| Transcriptome profiling and deciphering the regulatory role of global transcription factor fadR | Byung Hun Kim, Si Jae Park, Sang Yup Lee |
| Detection of the Splicing Sites with Kernel Method Approaches Dealing with Nucleotide Doublets | Masaki Yamamura, Osamu Gotoh |
| Gene Expression Analysis Using Fuzzy K-means Clustering | Chinatsu Arima, Taizo Hanai, Masahiro Okamoto |
| Kinetics behavior of G1-to-S cell cycle phase transition model | Yoshihiko Tashima, Taizo Hanai, Hiroyuki Hamada, Masahiro Okamoto |
| CAPIES: DNA Microarray-based Class Prediction System for Computational Diagnostics | Sung Geun Lee, Bonghee Seo, Yang Seok Kim |
| A Protein Structure Retrieval System using Atom-Atom Bond-Line Histogram | Sung-hee Park, Soo-jun Park, Sung-hoon Lee, Sun-hee Park |
| Gene Expression Analysis Refining System (GEARS) via Statistical Approach: A Preliminary Report | Chen-Hsin Chen, Henry Horng-Shing Lu, Chen-Tuo Liao, Chun-houh Chen, Ueng-Cheng Yang, Yun-Shien Lee |
| in silico Simulation Represents Adenoviral Gene Knockdown of Myocardial Ventricular Cell | Yasuhiro Naito, Motohiro Yoneda, Sayaka Ishinabe, Shoko Miyamoto, Nobuaki Sarai, Satoshi Matsuoka, Akinori Noma, Masaru Tomita |
| Mapping Database of cDNA and Genome Designed to Use for Various Applications | Akifumi Yamashita, Ken Kurokawa, Teruo Yasunaga |
| Prediction of Protein Functions Based on K-cores of Protein-Protein Interaction Networks and Amino Acid Sequences | Md. Altaf-Ul-Amin, Kensaku Nishikata, Toshihiro Koma, Teppei Miyasato, Yoko Shinbo, Md. Arifuzzaman, Chieko Wada, Maki Maeda, Taku Oshima, Hirotada Mori, Shigehiko Kanaya |
| Classification of protein sequences into paralog and ortholog clusters using sequence similarity profiles of KEGG/SSDB | Yohsuke Minowa, Toshiaki Katayama, Akihiro Nakaya, Susumu Goto, Minoru Kanehisa |
| Model Construction of the Energy Metabolism Pathway in Myocardial Cell | Motohiro Yoneda, Shoko Miyamoto, Yasuhiro Naito, Sayaka Ishinabe, Nobuaki Sarai, Satoshi Matsuoka, Akinori Noma, Masaru Tomita |
| Positive charge cores in DNA-binding proteins | Kimiko Horibe, Shigeki Mitaku |
| Prediction of Glycan Structures from Glycosyltransferase Expression Profiles | Shin Kawano, Yasushi Okuno, Kosuke Hashimoto, Harumi Yamamoto, Hiromu Takematsu, Yasunori Kozutsumi, Susumu Goto, Minoru Kanehisa |
| Analysis of DNA microarray data by using Self-Organizing Maps | Tomoyuki Kato, Kikuo Fujimura, Heizo Tokutaka, Yasushi Kawata, Masaaki Ohkita |
| Prediction of Protein - Protein Interactions from Phylogenetic Trees Using Partial Correlation Coefficient | Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Hiroyuki Toh, Minoru Kanehisa |
| GLYCAN: The Database of Carbohydrate Structures | Kosuke Hashimoto, Masami Hamajima, Susumu Goto, Shigekazu Masumoto, Masayuki Kawasima, Minoru Kanehisa |
| Extraction of Organism Groups from Whole Genome Comparisons | Yoshihiro Yamanishi, Akiyasu C. Yoshizawa, Masumi Itoh, Toshiaki Katayama, Minoru Kanehisa |
| Analysis of Reactive Modules in the Metabolic Pathways | Masaaki Kotera, Masahiro Hattori, Susumu Goto, Minoru Kanehisa |
| Transmembrane Protein Evolution by Internal Gene Duplication | Hironori Mitsuke, Keisuke Noto, Masafumi Arai, Toshio Shimizu |
| Common Features in Substrates of Multidrug Resistance Transporters | Yoshinobu Igarashi, Yasushi Okuno, Masahiro Hattori, Susumu Goto, Minoru Kanehisa |
| Extraction of a Thermodynamic Property for Biochemical Reactions in the Metabolic Pathway | Michihiro Tanaka, Yasushi Okuno, Takuji Yamada, Susumu Goto, Shunsuke Uemura, Minoru Kanehisa |
| Self-nonself discrimination based on incompatibility of amino acid sequences of human and viruses | Wataru Honda, Shuichi Kawashima, Minoru Kanehisa |
| KEGG API: A web service using SOAP/WSDL to access the KEGG system | Shuichi Kawashima, Toshiaki Katayama, Yoko Sato, Minoru Kanehisa |
| Metabolic pathway reconstruction for malaria parasite Plasmodium falciparum | Vachiranee Limviphuvadh, Yasushi Okuno, Toshiaki Katayama, Susumu Goto, Akiyasu C. Yoshizawa, Minoru Kanehisa |
| Development of Community Annotation Databases for Linking Genomes to Cellular Functions | Miho Furumichi, Yoko Sato, Toshiaki Katayama, Shuichi Kawashima, Minoru Kanehisa |
| The Construction of a Database for Ubiquitin Signaling Cascade | Tadahiko Sakiyama, Shuichi Kawashima, Akiyasu C. Yoshizawa, Minoru Kanehisa |
| Comprehensive Analysis of Delay in Transcriptional Regulation using Expression Profiles | Koji Ota, Takuji Yamada, Yoshihiro Yamanishi, Susumu Goto, Minoru Kanehisa |
| Combining Gene Expression Data with DNA Sequence Information for Estimating Gene Networks using Bayesian Network Model | Yoshinori Tamada, SunYong Kim, Hideo Bannai, Seiya Imoto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano |
| A Combined Experimental and Inferring Interactomes | Chung-Yen Lin, Chi-Shang Cho, Li-Ming Wang, Chia-Ling Chen, Pao-Yang Chen, Chen-Zen Lo, Chao A. Hsiung |
| HAPPY: Hypothetical And Putative Protein Database System | Takuya Murakami, Masatomo Najima, Michihiro Ogawa, Ken Kurokawa, Teruo Yasunaga |
| Genome Scale Classification of Extended Proteins by a predictor SOSUIdumbbell | Nobuyuki Uchikoga, Ke Rungcong, Fumitsugu Akazawa, Masashi Sonoyama, Shigeki Mitaku |
| KAREIDMAP: A System for Predicting and Mining Gene Regulatory Networks | Hironori Mizuguchi, Dai Kusui, Taku Oshima, Shigehiko Kanaya, Hirotada Mori |
| Analysis of Domain Combinations in Eukaryotic Genomes | Masumi Itoh, Akiyasu C. Yoshizawa, Shujiro Okuda, Susumu Goto, Minoru Kanehisa |
| Multiscale Bootstrap Analysis of Gene Networks Based on Bayesian Networks and Nonparametric Regression | Takeshi Kamimura, Hidetoshi, Shimodaira, Seiya Imoto, SunYong Kim, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano |
| Comprehensive Survey of Intracellular Transport System-Related Proteins in Complete Genomes and Draft Genomes | Akiyasu C. Yoshizawa, Masumi Itoh, Shujiro Okuda, Vachiranee Limviphuvadh, Tadahiko Sakiyama, Shuichi Kawashima, Minoru Kanehisa |
| Normalization of Target Flourescent using Reference Flourescent for cDNA Microarray Method | Yu Suzuki, Kenji Hatano, Shigehiko Kanaya, Shunsuke Uemura |
| The Clusters of Transmembrane Protein genes in Prokaryotic Genomes | Ichitaro Oya, Satoshi Mizuta, Toshio Shimizu |
| Detection of remote homologue using predicted structural information | Daisuke Ishibe, Katsunori Uehara, Takeshi Kawabata, Nobuhiro Go |
| Genome wide analysis reveals strong correlation between CpG islands and tissue-specificity | Riu Yamashita, Yutaka Suzuki, Toshihisa Takagi, Sumio Sugano, Kenta Nakai |
| Bioinformatics for Oncogenomic Target Identification | Masaru Katoh |
| Comparative Genomics between Drosophila and Human | Masuko Katoh, Masaru Katoh |
| BioRuby: Open-source Bioinformatics Library | Naohisa Goto, Mitsuteru C. Nakao, Shiuichi Kawashima, Toshiaki Katayama, Minoru Kanehisa |
| Phylogenetic analysis of eubacterial transcriptional systems based on the DBTBS database of B. subtilis transcription factors and promoters | Yuko Makita, Naotake Ogasawara, Kenta Nakai |
| Protein Family Classiffication Using Second-Order Recurrent Neural Networks | Jinmiao Chen, Narendra S. Chaudhari |
| A PCA based method of gene expression visual analysis | Kunihiro Nishimura, Koji Abe, Shumpei Ishikawa, Shuichi Tsutsumi, Koichi Hirota, Hiroyuki Aburatani, Michitaka Hirose |
| Genetic Networks with Stochastic Fluctuations | Luonan Chen, Ruiqi Wang, Kazuyuki Aihara |
| INOH: A Textual Knowledge based Pathway Database | Satoko Yamamoto, Tatsuya Kushida, Naotaka Ono, Yuki Yamagata, Toshihisa Takagi, Ken-ichiro Fukuda |
| Gene List of Sphingomonas chungbukensis DJ77 | Kwon Hae-Ryong, Hyun-Ju Um, Jeong-Su Oh, Wan-Sup Cho, Young-Chang Kim |
| Extraction of Biological Motifs by Gibbs Sampler from the promoters of Homo Sapiens, Saccharomyces cerevisiae and Bacillus subtilis | Natalia Poluliakh, Kenta Nakai |
| Distributed Client-Server System Architecture for High Performance Simulations on Genomic Object Net | Tomokazu Kono, Ryuhei Noda, Hironori Kitakaze, Masao Nagasaki, Atsushi Doi, Hiroshi Matsuno, Satoru Miyano |
| Enumeration of Likely Gene Networks and Network Motif Extraction for Large Gene Networks | Sascha Ott, Satoru Miyano |
| Development of Efficient Designing Method for Target Specific Probe Sets | So Young Yoo, Hyeong Jun An, Doheon Lee, Sang Yup Lee |
E-mail: giw2004@ims.u-tokyo.ac.jp