List of Accepted Papers
|
T i t l e
|
A u t h o r (s) |
| Processing sequence annotation data using the Lua programming language | Yutaka Ueno, Masanori Arita, Toshitaka Kumagai, Kiyoshi Asai |
| PatternHunter II: Highly Sensitive and Fast Homology Search | Ming Li, Bin Ma, Derek Kisman, John Tromp |
| Clone-array pooled shotgun mapping and sequencing: design and analysis of experiments | M. Csuros, B. Li and, A. Milosavljevic |
| Layout Search of a Gene Regulatory Network for 3-D Visualization | Naoki Hosoyama, Hitoshi Iba |
| Prediction and Analysis of β-turns in Proteins by Support Vector Machine | Pham ThoHoan, Kenji Satou, Ho TuBao |
| On Half Gapped Seeds | Wei Chen, Wing-Kin Sung |
| Statistical Inference Methods for Detecting Altered Gene Associations | Sang-Heon Yoon, Je-Suk Kim, Hae-Hiang Song |
| An In-silico Method for Prediction of Polyadenylation Signals in Human Sequences | Huiqing Liu, Hao Han, Jinyan Li, Limsoon Wong |
| DOCKING UNBOUND PROTEINS WITH MIAX: A NOVEL ALGORITHM FOR PROTEIN-PROTEIN SOFT DOCKING | Carlos A. Del Carpio Munoz, Tobias Peissker, Atsushi Yoshimori, Eiichiro Ichiishi |
| Multi-class Support Vector Machines for Protein Secondary Structure Prediction | Minh N. Nguyen, Jagath C. Rajapakse |
| Splice site detection with a higher-order Markov model implemented on a neural network | Loi Sy Ho, Jagath C. Rajapakse |
| A Domain Combination Based Probabilistic Framework for Protein-Protein Interaction Prediction | Dongsoo Han, Hong-Soog Kim, Jungmin Seo, Woohyuk Jang |
| Development of an ab initio Protein Structure Prediction System ABLE | Takashi Ishida, Takeshi Nishimura, Makoto Nozaki , Tsuyoshi Inoue, Tohru Terada, Shugo Nakamura, Kentaro Shimizu |
| MetaFluxNet, a Program Package for Metabolic Pathway Construction and Analysis, and Its Use in Large-scale Metabolic Flux Analysis of Escherichia coli | Sang Yup Lee, Dong-Yup Lee, Soon Ho Hong, Tae Yong Kim, Hongsoek Yun, Young-Gyun Oh, Sunwon Park |
| Neural-Network-Based Parameter Estimation in Complex Biomedical Systems | Jonas S. Almeida, Eberhard O. Voit |
| On selecting features from splice junctions: An analysis using information theoretic and machine learning approaches | Christina L. Zheng, Virginia R. de Sa, Michael Gribskov, T. Murlidharan Nair |
| Efficient Tree-Matching Methods for Accurate Carbohydrate Database Queries | Kiyoko F. Aoki, Atsuko Yamaguchi, Yasushi Okuno, Tatsuya Akutsu, Nobuhisa Ueda, Minoru Kanehisa, Hiroshi Mamitsuka |
| Reducing false positives in molecuar pattern recognition | Xijin Ge, Shuichi Tsutsumi, Hiroyuki Aburatani, Shuichi Iwata |
| Heuristics for Chemical Compound Matching | Masahiro Hattori, Yasushi Okuno, Susumu Goto, Minoru Kanehisa |
| On Combining Multiple Microarray Studies for Improved Functional Classification by Whole-Dataset Feature Selection | See-Kiong Ng, Soon-Heng Tan, V.S. Sundararajan |
| Finding Optimal Gene Networks Using Biological Constraints | Sascha Ott, Satoru Miyano |
| Multi-class Protein Fold Classification using a new Ensemble Machine Learning Approach | Aik Choon TAN, David GILBERT, Yves DEVILLE |
| Construction of genetic network by means of evolutionary algorithms and combined fitness function | Ando Shin, Hitoshi Iba |
| A case study of object-oriented bio-chemistry: an unified specification of the coagulation cascade | Jacqueline Signorini, Patrick Greussay |
| Computational Inference of Regulatory Pathways in Microbes: An application to phosphorus assimilation pathways in Synechococcus WH8102 (Extended Abstract) | Z. Su, P. Dam, X. Chen, V. Olman, T. Jiang, B. Palenik, Y. Xu |
E-mail: giw2004@ims.u-tokyo.ac.jp