List of Accepted Papers
|
T i t l e
|
A u t h o r (s) |
| Automatic Ontology Construction from the Literature | Christian Blaschke and Alfonso Valencia |
| A Comparative Study on Feature Selection and Classification Methods Using Gene Expression Profiles and Proteomic Patterns | Huiqing Liu , Jinyan Li and Limsoon Wong |
| Comparative Analysis of the Genomes of Cyanobacteria and Plants | Naoki Sato |
| Point Matching Under Non-Uniform Distortions and Protein Side Chain Packing Based on an Efficient Maximum Clique Algorithm | Dukka Bahadur K. C., Tatsuya Akutsu, Etsuji Tomita, Tomokazu Seki and Asao Fujiyama |
| A Novel Bioinformatic Strategy for Unveiling Hidden Genome Signatures of Eukaryotes: Self-Organizing Map of Oligonucleotide Frequency | Takashi Abe, Shigehiko Kanaya, Makoto Kinouchi, Yuta Ichiba, Tokio Kozuki and Toshimichi Ikemura |
| Large Scale Statistical Prediction of Protein-Protein Interaction by Potentially Interacting Domain (PID) Pair. | Wan Kyu Kim, Jong Park, Jung Keun Suh |
| Aligning Multiple Protein Sequences by Parallel Hybrid Genetic Algorithms | Hung Dinh Nguyen, Ikuo Yoshihara, Kunihito Yamamori and Moritoshi Yasunaga |
| A Computational Method for Identifying DNA-Protein Binding Sites Based on DNA Deformation Energy | Nicholas R. Steffen, Scott D. Murphy, Richard H. Lathrop, Michael L. Opel, Lorenzo Tolleri and G. Wesley Hatfield |
| In Silico Metabolic Pathway Analysis and Design: Succinic Acid Production by Metabolically Engineered Escherichia coli as an Example | Sang Yup Lee, Soon Ho Hong and Soo Yun Moon |
| Very Fast Algorithms for Evaluating the Stability of ML and Bayesian Phylogenetic Trees | Peter J. Waddell, Hirohisa Kishino, Rissa Ota |
| Using Feature Generation and Feature Selection for Accurate Prediction of Translation Initiation Sites | Fanfan Zeng, Roland H.C. Yap, Limsoon Wong |
| Physical Modeling of the Cellular Arrangement in C. elegans Early Embryo: Effect of Rounding and Stiffening of the Cells | Atsushi Kajita, Masayuki Yamamura, Yuji Kohara |
| Detection of Periodicity in Eukaryotic Genomes on the Basis of Power Spectrum Analysis | Atsushi Fukushima, Toshimichi Ikemura, Taku Oshima, Hirotada Mori, and Shigehiko Kanaya |
| Marginalized Kernels for RNA Sequence Data Analysis | Taishin Kin, Koji Tsuda, Kiyoshi Asai |
| Genomic Sorting with Length-Weighted Reversals | Ron Y. Pinter and Steven Skiena |
| Inference of Euler Angles for Single Particle Analysis by Using Genetic Algorithms | Shusuke Saeki, Kiyoshi Asai, Katsutoshi Takahashi, Yutaka Ueno, Katsunori Isono, Hitoshi Iba |
| An Algorithmic Analysis of the Role of Unequal Crossover in Alpha Satellite DNA Evolution | Can Alkan, Jeff Bailey, Evan Eichler, S. Cenk Sahinalp and Eray Tuzun |
| Analysis of Common k-mers for Whole Genome Sequences | Jeong-Hyeon Choi and Hwan-Gue Cho |
| Folding Pattern Recognition in Proteins Using Spectral Analysis Methods | Carlos A. Del Carpio Munoz and Julio Cesar Carbajal L. |
| A String Pattern Regression Algorithm and Its Application to Pattern Discovery in Long Introns | Hideo Bannai, Shunsuke Inenaga, Ayumi Shinohara, Masayuki Takeda and Satoru Miyano |
| Origin of Most Primitive mRNAs and Genetic Codes via Interactions between Primitive tRNA Ribozymes | Koji Ohnishi, Shouken Hokari, Hiroshi Shutou, Madoka Ohshima and Naotaka Furuichi |
| A Novel Index which Precisely Derives Protein Coding Regions from Cross-Species Genome Alignments | Hideki Noguchi, Tetsushi Yada and Yoshiyuki Sakaki |
| Extraction of Organism Groups from Phylogenetic Profiles Using Independent Component Analysis | Yoshihiro Yamanishi, Masumi Itoh, Minoru Kanehisa |
E-mail: giw@ims.u-tokyo.ac.jp