| LIST OF ACCEPTED POSTERS | |
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Title
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Authors
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| Correlation-Based Cluster Analysis Using Mixture of Constrained PCAs | Taku Yoshioka, Natsuko Kawase, Shin Ishii |
| Hybrid Clustering Method for DNA Microarray Data Analysis | Sungwoo Kwon, Chonghun Han |
| Development of Clustering and Leaf Ordering Tool for Gene
Expression Profiles |
Sang
Soo Yeo, Jung Won Rhee, Sung Kwon Kim |
| A Novel Clustering Algorithm with Map Energy Minimization | Takatoshi
Kawai, Yasuto Yokoi, Yuji Miura, Tsuyoshi Tabata, Takeshi Nagasu, Ken Aoshima |
| Characteristics of Support Vector Machines in Gene Expression Analysis | Daisuke
Komura, Hiroshi Nakamura, Shuichi Tsutsumi, Hiroyuki Aburatani, Shigeo Ihara |
| Quick Learning for Batch-Learning Self-Organizing Map | Makoto
Kinouchi, Naoshi Takada, Kudo Yoshihiro, Toshimichi Ikemura |
| Precise Gene Expression Measurement with Outlier Detection | Jan
Dupac, Chihiro Uematsu, Meishan Shen,Vaclav Hlavac, Hideki Kambara, Kazunori Okano |
| Global Gene Expression Profiling of E. coli and Its Mutant Unable to Produce Acetate |
Won Jae Heo, Sung Ho Yoon, Sang Yup Lee |
| Gene Expression Analysis of Heat Shock Response Using Fuzzy ART | Naoki
Kato, Takeshi Kobayashi, Hiroyuki Honda |
| A Novel Algorithm to Test Significant Differences in Microarray
Experiments |
Kyoko
Toda, Seiichi Ishida, Yuzuru Hayashi, Kotoko Nakata, Rieko Matsuda, Yukari Shigemoto-Mogami, Kayoko Fujishita, Shogo Ozawa, Jun-ichi Sawada, Kazuhide Inoue, Koichi Shudo |
| Gene Selection Using Gene Expression Data in a Virtual Environment | Kunihiro
Nishimura, Shumpei Ishikawa, Shuichi Tsutsumi, Hiroyuki Aburatani, Koichi Hirota, Michitaka Hirose |
| Selection of Causal Gene Sets from Transcriptional Profiling by
FNN Modeling and Prediction of Lymphoma Outcome |
Tatsuya
,o, Miyuki Katayama, Masao Seto, Takeshi Kobayashi, Hiroyuki Honda |
| Parametric Treatment of cDNA Microarray Data | Tomokazu Konishi |
| Designing of a High-Sensitivity and Low-Background cDNA Microarray | Tadasu
Shin-i, Toshifumi Tsukahara, Yasuhiro Kuroda, Ichizo Nishino |
| Modification of ASIAN: Deduction of a Framework of Gene
Regulatory Systems from Expression Profile Data |
Katsuhisa
Horimoto, Sachiyo Aburatani, Satoru Kuhara, Hiroyuki Toh |
| A Method for Gene Regulations Inference from Gene Expression
Data of Multiple Deletions Mutants |
Kotaro
Baba, Koji Kyoda, Hiroaki Kitano, Shuichi Onami |
| Assignment of Direct Binding in Gene Regulatory Systems from
Expression Profiles |
Sachiyo
Aburatani, Satoru Kuhara, Hiroyuki Toh, Katsuhisa Horimoto |
| Ribozyme and Macroarray: Identification of AP-2-regulated Genes
by Macroarray Profiling of Gene Expression |
Hiroshi
Minoshima, Eigo Suyama, Hiroaki Kawasaki, Kazunari Taira |
| New Training Method for Computational Identification of Promoter | Jung
Won Rhee, Sang Soo Yeo, Kyung Rak Na, Sung Kwon Kim |
| Collection and Analysis of Eukaryotic Promoter Regions: DBTSS
(DataBase of Transcriptional Start Sites) |
Riu
Yamashita, Yutaka Suzuki, Toshihisa Takagi, Sumio Sugano, Kenta Nakai |
| Prediction
of Co-Regulated Genes in Eubacterial Genomes by Phylogenetic Footprinting |
Yuko
Makita, Goro Terai, Shigeki Mitaku, Toshihisa Takagi, Kenta Nakai |
| Development of an Efficient Method to Search Conserved Noncoding
Sequences |
Hangil Chang |
| Building Common Patterns for Transcription Factor Binding Sites
of Escherichia coli |
Weijiang Li, Hiroyuki Kurata |
| Inferring Combinatorial Regulation of Binding Sites and
Transcription Factors on Gene Expression |
Mamoru
Kato, Naoya Hata, Nila Banerjee, Michael Q. Zhang |
| Target Prediction of Transcription Factors: Application of
Structure-Based Method to Yeast Genome |
Akinori
Sarai, Samuel Selvaraj, Michael M. Gromiha, Joerg-Gerald Siebers, Ponraj Prabakaran, Hidetoshi Kono |
| Prediction of DNA Binding in Proteins from Composition, Sequence
and Structure |
Shandar
Ahmad, M. Michael Gromiha, Akinori Sarai |
| Analysis of Complementarity of Protein-DNA Interactions Using
the Electrostatic Potential and the Molecular Surface Geometry |
Yuko
Tsuchiya, Kengo Kinoshita, Haruki Nakamura |
| Analysis of Protein-RNA Interactions at Atomic Level | Hyunwoo
Kim, Euna Jeong, Seong-Wook Lee, Kyungsook Han |
| Classification of C2H2 Zinc Finger Domains Using Support Vector
Machines |
Takafumi
Nagano, Makiko Suwa, Kiyoshi Asai |
| The Role of Electrostatics in Discrimination of Adenine and
Guanine by Proteins |
Dakshanamurthy
Sivanesan, Gautam Basu, Nobuhiro Go |
| Protein Interactions in the Whole Human Genome | Kyungsook
Han, Byunggyu Park, Hyongguen Kim, Hong-Jin Kim, Jong Park |
| Putative Protein Interactome Database | Chung-Yen
Lin, Chi-Shang Cho, Chen-Zen Lo, Chao A. Hsiung |
| Prediction of Protein-Protein Interaction Sites Using Support
Vector Machines |
Yohei
Minakuchi, Kenji Satou, Akihiko Konagaya, Takashi Ito |
| Interaction generality, a measurement to assess the reliability
of a protein-protein interaction |
Rintaro
Saito, Masaru Tomita, Harukazu Suzuki, Yoshihide Hayashizaki |
| Towards a Functional Claasification of ARE Protein Interactoins | Jorg
Hackermuller, Nicole-Claudia Meisner,, ras Aszodi, Manfred Auer, Markus Jarritz |
| Indirect Relations in Yeast Protein Interactome | Akihiro
Nakaya, Akiyasu C. Yoshizawa, Susumu Goto, Minoru Kanehisa |
| Searching for Common Protein Networks in Neurodegenerative Disorders | Vachiranee
Limviphuvadh, Susumu Goto, Seigo Tanaka, Kunihiro Ueda, Minoru Kanehisa |
| Combining MIAX-Based In-Silico-Peptide-Chips with
Membrane-Support Peptide-Array-Chips Oriented to Novel Drug Discovery |
Carlos
A. Del Carpio-Munoz, William Campbell, Mitoshi Kunimatsu |
| Identification and Classification of Eukaryotic GPCRs by Binary
Topology Pattern |
Yasuhito
Inoue, Masami Ikeda, Toshio Shimizu |
| Application of Covariation Analysis in 3D Structure Prediction
of G-Protein Coupled Receptors |
Wataru
Nemoto, Takashi Imai, Takeshi Kikuchi, Norihisa Fujita |
| Analysis of the Evolutionary Relationships of the PDZ Domains | Masaki
Yamamura, Tatsuya Akutsu, Susumu Goto |
| Protein Structure Analysis Using Continuous Density Hidden
Markov Models |
Morihiro
Hayashida, Nobuhisa Ueda, Katsuhisa Horimoto, Tatsuya Akutsu |
| Identification of Ortholog Groups in KEGG/SSDB by Considering
Domain Structures |
Masumi
Itoh, Akihiro Nakaya, Minoru Kanehisa |
| FROG (Fitted Rotation and Orientation of Protein Structure by
Means of Real-Coded Genetic Algorithm) : Asynchronous Parallelizing for Protein Structure-Based Comparison on the Basis of Geometrical Similarity |
Sung-Joon Park, Masayuki Yamamura |
| Formulation of the Energy Distribution among a Globular Protein
Structure Ensemble for the High-through-Put Screening of Sequences |
Takuyo Aita, Yuzuru Husimi |
| Importance of Long-range Interactions for Determining the
Folding Rate and Transition State Structures of Two-state Proteins |
M. Michael Gromiha, S. Selvaraj |
| Pathways - a Unifying Framework for Systems Biology Data | Michael
A. Gibson, Richard Messenger, Jun Qian, Lingyan Zhu, Christophe Beaumont, Steve,erson, Joseph A. Borkowski |
| Generalized Representation of Metabolic and Regulatory Pathways | Min Kyung Kim, Hyun Seok Park |
| Extraction of Modules from the Metabolic Pathways with
Phylogenetic Profile |
Takuji
Yamada, Yoshihiro Yamanishi, Susumu Goto, Minoru Kanehisa |
| Vzyme: a Template-Based Method to Predict Reactions between Two
Chemical Compounds |
Yasushi
Okuno, Masahiro Hattori, Masaaki Kotera, Yoshinobu Igarashi, Susumu Goto, Minoru Kanehisa |
| Candidate Genes at Locus Heterogeneity Closely Lying on
Metabolic Pathway: a Hypothesis Test toward Phenotype-to-Genes Search |
Eli
Kaminuma, Tetsuro Toyoda, Akihiko Konagaya |
| A Mathematical Modeling of Signal Transduction Cascade on
Raf-Akt Cross-Talk |
Mariko
Hatakeyama, Shuhei Kimura, Noriko Yumoto, Mio Ichikawa, Takuji Kawasaki, Takashi Naka, Akihiko Konagaya |
| Computer Modeling of Ras-MAPK Signal Transduction Pathway | Satoshi Yamada, Akihiko Yoshimura |
| Exploring Flux Distribution Profiles for Switching Pathways
Using Multiobjective Flux Balance Analysis |
Dong-Yup
Lee, Young-gyun Oh, Hongsuk Yoon, Sang Yup Lee, Sunwon Park |
| Discovery
of Analogous Enzymes in Thiamin Biosynthesis by Anticorrelation |
Enrique
Morett, Jan O. Korbel, Emmanuvel Rajan, Gloria Saab-Rincon, Leticia Olvera, Maricela Olvera, Steffen Schmidt, Berend Snel, Peer Bork |
| Genome-Wide Search of Human Genes Implicated in WNT Signaling
Pathway Using Bioinformatics |
Masaru Katoh |
| Bootstrap analysis of gene networks based on Bayesian netowrks
and nonparamatric regression |
Seiya
Imoto, Sunyong Kim, Hidetoshi Shimodaira, Sachiyo Aburatani, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano |
| Analysing Cyclic Gene Network by using Bayesian Network and
Nonparametric Regression |
Kim SunYong, Seiya Imoto, Satoru Miyano |
| An Analysis of Cancer Microarrays in the Pathway Context Using
Bayesian Networks |
Yohsuke
Minowa, Susumu Goto, Minoru Kanehisa |
| Statistical Properties of Randomly Constructed Boolean Networks
that Resemble the Transcription Factor Network of Escherichia coli |
Chikoo Oosawa, Michael A. Savageau |
| Genetic Network Analysis Using F2DMatrix | Hiro
Takahashi, Shuta Tomida, Takeshi Kobayashi, Hiroyuki Honda |
| Comparison between Two Different Genetic Network Inferring
Models on Expression Profiles in S. cerevisiae |
Yoriko
Takahashi, Yuji Arikawa, Shoji Watanabe, Yukihiro Maki, Sachiyo Aburatani, Satoru Kuhara, Yukihiro Eguchi |
| Inference of Genetic Network Using the Expression Profile Time
Course Data of Mouse P19 Cells |
Yukihiro
Maki, Takanori Ueda, Masahiro Okamoto, Naoya Uematsu, Kentaro Inamura, Kazuhiko Uchida, Yoriko Takahashi, Yukihiro Eguchi |
| An Inference Engine for Gene Network Determination by Means of
Optical Array Logic |
Kouichi Nitta, Jun Tanida |
| Development of System Identification Technique Based on
Real-Coded Genetic Algorithm |
Takanori Ueda, Isao Ono, Masahiro Okamoto |
| A Fast Clustering System for a Huge Number of Nucleotide Sequences | Tomohiro Yasuda, Tetsuo Nishikawa |
| Computational Structural Genomics of a Complete Minimal Organism | John-Marc
Chandonia, Igor Grigoriev, In-Geol Choi, Hisao Yokota, Peter S. Klosterman, Dongxiang He, Steven E. Brenner |
| Global Analysis of Distribution and Preference of A-Tract in
Bacteria and Archaea Genomes |
Takeshi
Ozaki, Atsushi Fukushima, Hayato Kimura, Taku Oshima, Shigehiko Kanaya, Hirotada Mori |
| Prediction of Target Substrates of Transporters in Escherichia coli | Shin-ichi
Matsusaki, Hidemi Watanabe, Taku Oshima, Shigehiko Kanaya, Hirotada Mori |
| Comparison of SVM-Based Methods for Remote Homology Detection | Hiroto
Saigo, Jean-Philippe Vert, Tatsuya Akutsu, Nobuhisa Ueda |
| Improvement in Performance of Homology-Based Prediction of Human
Gene Organizations |
Osamu Gotoh, Kaoru Sugimori |
| Comprehensive Analysis of Tandem Repeat Sequences in
Cyanobacteria Genome |
Toshiaki
Katayama, Shinobu Okamoto, Rei Narikawa, Takatomo Fujisawa, Shuichi Kawashima, Masumi Itoh, Masayuki Ohmori, Minoru Kanehisa |
| CYORF: Community Annotation of Cyanobacteria Genes | Miho
Furumichi, Yoko Sato, Tatsuo Omata, Masahiko Ikeuchi, Minoru Kanehisa |
| Comparative Analysis of Rab GTPases and SNAREs in Eukaryotic
Genomes |
Akiyasu
C. Yoshizawa, Shuichi Kawashima, Minoru Kanehisa |
| Correlation Analysis between tRNA Composition and Codon Usage
Using Diversity and Equitability Index |
Haruo
Susuki, Kazuharu Arakawa, Tatekimi Matsuzaki, Rintaro Saito, Masaru Tomita |
| Tandem Repeats in Prokaryotic Genomes | Jiewen
Liu, Hikaru Munakata, Abulimiti Aimaiti, Akito Taneda, Kenji Oosawa, Toshio Shimizu |
| Dot Plot Detects Repetitive Structures in DNA Sequences | Akito Taneda, Toshio Shimizu |
| Power Spectra of DNA Sequences in Phage and Tumor Suppressor
Genes (TSG) |
Eisei Takushi |
| Prediction of RNA Pseudoknots -- Comparative Study of Genetic
Algorithms |
Dongkyu Lee, Kyungsook Han |
| Transmembrane-Protein-Gene Clusters in Prokaryotic Genomes | Tsutomu Yokoyama, Toshio Shimizu |
| Classification of Transmembrane Protein Families Based on
Topological Similarity |
Hironori
Mitsuke, Yoshiaki Sugiyama, Toshio Shimizu |
| Comprehensive Functional Classification/Identification of
Prokaryotic Transmembrane Proteins by Sequence and Topology Similarities |
Yoshiaki
Sugiyama, Masafumi Arai, Toshio Shimizu |
| Analysis of
Asymmetry of Membrane Proteins by Evolutionary Trace |
Hisako
Ichihara, Hiromi Daiyasu, Hiroyuki Toh |
| Analysis of Aberrant Splicing Data | Yoshinori
Tamada, Sascha Ott, Hideo Bannai, SunYong Kim, Kenta Kakai, Satoru Miyano |
| Positional Correlations in Splicing Patterns ―Its Application to
Prediction of Splice Sites |
Takumi
Watanabe, Yumi Kudo, Toshio Shimizu |
| Distribution Analysis of the Oligonucleotide around 5' Splice
Sites in H. sapiens, M. musculus, D. melanogaster and A. thaliana pre-mRNAs |
Sumie
Kitamura-Abe, Nobuyuki Takahashi, Hitomi Itoh, Atsushi Sakurai, Rintaro Saito, Takanori Washio, Masaru Shimbo, Akihiro Tsutsumi, Masaru Tomita |
| Parameter Landscape Analysis for Improving the Performance of
Common Motif Detection Algorithms |
Natalia
Poluliakh, Michiko Konno, Toshihisa Takagi, Kenta Nakai |
| A Method for the Best Model Selection for Single and Paired Motifs | Daisuke Shinozaki, Osamu Maruyama |
| NJML+P: A Hybrid Algorithm of The Maximum Likelihood and Neighbor-Joining Methods Using Parallel Computing |
Satoshi OOta, Naruya Saitou |
| Gapless Local Alignment of Multiple Sequences | Martin
C Frith, Joel H Graber, Zhiping Weng, John L Spouge |
| Weak Homology Detection by Profile-Profile Comparison | Masashi
Fujita, Tatsuya Akutsu, Susumu Goto, Minoru Kanehisa |
| Building a Better BLAST: A Systematic Comparison of BLAST Implementations |
Alan
Kilian, Goto Kosuke, Yasuhiro Kuroda, Daniel Naimey |
| Improvement of PSORT II Protein Sorting Prediction for Mammalian
Proteins |
Mitsuteru C. Nakao, Kenta Nakai |
| Finding Conserved Amino Acid Sequences among Prokaryotic Proteomes | Naohisa
Goto, Ken Kurokawa, Teruo Yasunaga |
| A Visualization Tool for Gene Network Discovery - G.NET | Ken
Aoshima, Masayuki Ikawa, Satoshi Tanaka, Koji Yanagisawa, Kim Sun Yong, Naoki Nariai, Seiya Imoto, Satoru Miyano |
| BiopathwayBuilder: Nested 3D Visualization System for Complex
Molecular Interactions |
Changsu Lee, Jinah Park, Jong C. Park |
| Genome Visualization by Isometric Projection Focused on
Replication Origins and Termini, and Genome Instability |
Hirokazu
Nishio, Ken-nosuke Wada, Yoshiko Wada, Atsushi Fukushima, Toshimichi Ikemura, Hirotada Mori, Taku Oshima, Shigehiko Kanaya |
| Complexity of Pedigree Analysis | Daisuke Ogino, Hideki Sawada |
| Experimental Observations and Simulations by Genomic Object Net
of Notch Signaling in Drosophila Multicellular Systems |
Hiroshi
Matsuno, Ryutaro Murakami, Rie Yamane, Naoyuki Yamazaki, Sachie Fujita, Haruka Yoshimori, Satoru Miyano |
| Development of Genomic Object Net Builder for Supporting XML
Design for Visualization |
Toshinori
Tanaka, Hironori Kitakaze, Hiroshi Matsuno, Satoru Miyano |
| XML Pathway File Conversion between Genomic Object Net and SBML | Masafumi
Nakano, Hironori Kitakaze, Hiroshi Matsuno, Satoru Miyano |
| A Computational Model of Mammalian Cell Cycle Using Petri Nets | Shuji
Kotani, Takashi Yoshioka, Akihiko Konagaya |
| Protein Explorer: A Petaflops Special-Purpose Computer for
Molecular Dynamics Simulations |
Makoto
Taiji, Tetsu Narumi, Yousuke Ohno, Noriyuki Futatsugi, Atsushi Suenaga, Naoki Takada, Akihiko Konagaya |
| Development of Biochemical System Simulator with Parameter Estimator | Takuji
Kawasaki, Shuhei Kimura, Mariko Hatakeyama, Takashi Naka, Akihiko Konagaya |
| A Study of Development Scheme of Biosimulator | Shigeyuki
Mitsui, Hideko Urushihara, Kazuko Hagiwara, Hiroya Nobori, Hiroyuki Watanabe, Katsumi Sakata |
| BIOCAD Project for Synthesis and Analysis of Gene Regulatory
Networks |
Hiroyuki
Kurata, Yoshiyuki Sumida, Shin Tanaka, Kouichi Masaki, Takayuki Tanaka, Yuki Urago, Ken Ohashi |
| A π-Calculus Model of the Na Pump | Gabriel
Ciobanu, Vlad Ciubotariu, Bogdan
Tanasa |
| Theoretical Analyses of Circadian Oscillation Regulated by mRNA
Half-Life |
Nobukazu Ohki, Masatoshi Hagiwara |
| Bifurcation Diagram Analyzer for Differential Equations of Biological Model | Rikuhiro Yamada, Minoru Kanehisa |
| Electrophysiological Simulation of Myocardial Cell Using E-CELL System | Shoko
Miyamoto, Yasuhiro Naito, Motohiro Yoneda, Sayaka Ishinabe, Shinobu Kuratomi, Nobuaki Sarai, Satoshi Matsuoka, Akinori Noma, Masaru Tomita |
| Construction of a Simulation Model of Diabetes for
Pathophysiological Analysis Using E-Cell System |
Yasuhiro
Naito, Hiroshi Ohno, Atsumi Sano, Hiromu Nakajima, Masaru Tomita |
| A Simulation Model of Cardiovascular System for Diabetes Pathophysiological Model using E-Cell System |
Atsumi
Sano, Yasuhiro Naito, Hiroshi Ohno, Hiromu Nakajima, Masaru Tomita |
| Automatic Transformation of Kinetic Equations into S-System and
GMA Forms |
Yohei
Yamada, Ayako Kinoshita, Yoichi Nakayama, Masaru Tomita |
| OBIGrid: A New Computing Platform for Bioinformatics | Fumikazu
Konishi, Akinobu Fukuzaki, Kenji Satou, Tomoyuki Yamamoto, Xavier Defago, Akihiko Konagaya |
| Development of Database Systems by Integrating Heterogeneous
Metabolic Databases |
Jin
Sik Kim, Sung Ho Yoon, Doheon Lee, Sang Yup Lee |
| New Features of PDBj-ML, an XML format for Protein Data Bank | Nobutoshi
Ito, Hisashi Sakamoto, Kaori Kobayashi, Yoshikazu Kaneta, Yohei Kawaguchi, Takenao Ohkawa, Haruki Nakamura |
| Classification and Analysis of KEGG/REACTION Database | Masaaki
Kotera, Yasushi Okuno, Masahiro Hattori, Susumu Goto, Minoru Kanehisa |
| Improvement of the LIGAND Chemical Database | Rumiko
Yamamoto, Tomoko Komeno, Susumu Goto, Yasushi Okuno, Masahiro Hattori, Minoru Kanehisa |
| The Construction and Analysis of the Multidrug Resistance
Transporter Knowledge-Base |
Yoshinobu
Igarashi, Yasushi Okuno, Susumu Goto, Minoru Kanehisa |
| Database of Operons in Bacillus subtilis | Shujiro
Okuda, Shuichi Kawashima, Minoru Kanehisa |
| Development of a Protein-Ligand Interaction Database, ProLINT,
and Its Application to QSAR Analysis |
Kouji Kitajima, Shandar Ahmad, Samuel
Selvaraj, Hideo Kubodera, Shinji Sunada, Jianghong An, Akinori Sarai |
| Recent Developments in ProTherm: Thermodynamic Database for
Proteins and Mutants |
K.
Abdulla Bava, M. Michael Gromiha, Hatsuho Uedaira, Koji Kitajima, Akinori Sarai |
| Progress of ProNIT: Thermodynamic Database for Protein-Nucleic
Acid Interactions |
Hatsuho
Uedaira, Ponraj Prabakaran, M. Michael Gromiha, Kouji Kitajima, Akinori Sarai |
| Kinase Pathway Database: An Integrated Resource of Automatically
Extracted Information and Sequence Analysis |
Asako
Koike, Yoshiyuki Kobayashi, Toshihisa Takagi |
| Database of Human UV-regulated Genes | Goro
Terai, Makoto Yamazaki, Yoshinori Sugiyama, Hiroko Ao, Shintaro Inoue, Toshihisa Takagi |
| An Integrated Database System for Full-length Human cDNA in NEDO
Full-length Human cDNA Sequencing Project |
Tetsuo
Nishikawa, Koichi Kimura, Tomohiro Yasuda, Keiichi Nagai, Sumio Sugano, Takao Isogai |
| SEVENS: A Comprehensive Collection of Human Seven Transmembrane
Helix Receptors. |
Makiko
Suwa, Masanori Arita, Shinichi Matsumoto, Shuichi Tsutsumi, Hiroyuki Aburatani, Kiyoshi Asai,Yutaka Akiyama |
| Construction of Pathogenic Bacterial DB and Integration of Oligonucleotide Probe Selection Tools |
Heung-Soo
Park, Byeong-Chul Kang, Jun-Hyung Park,Hyun-Jung Jang, Hyuk-Jin Choi, Ho-Young Kang, Chang-Jin Shin, Hee-Kyung Park, Cheolmin Kim |
| A Nuclear Receptor Database that Maps Pathways to Diseases | Kotoko
Nakata, Masumi Yukawa, Naomi Komiyama, Tatsuya Nakano, Tsuguchika Kaminuma |
| GENIUS II: A Database System Including Complete Genome ORFs that
are Assigned to Protein Three-Dimensional Domains |
Yukimitsu Yabuki, Yuri Mukai, Makiko Suwa |
| ProMode: A Database of Normal Mode Analysis of Proteins | Hiroshi Wako, Shigeru Endo |
| RAD: Rice Annotation Database | Yuichi Ito, Isamu Ohta, Yoshiyuki Mukai, Shinji Naito, Baltazar A. Antonio, Atsuko Shimano, Masayoshi Masukawa, Michie Shibata, Mayu Yamamoto, Kohji Arikawa, Yasumichi Sakai, Kazuyoshi Makino, Katsumi Sakata, Nobukazu Namiki, Takashi Matsumoto, Takuji Sasaki |
| Development of
a Database Platform for the Rice Genome Project |
Minoru
Yoshikawa, Masakazu Inaba, Kiyoshi Matsubara, Hideaki Koike |
| A New Method for Database Searching: The BlastNP | Jan Charles Biro |
| Design of Various High Quality Random Libraries for in vitro Protein Evolution |
Sayaka
Soramoto, Shingo Ueno, Ichiro Tabuchi, Yuzuru Husimi |
| Development and Implementation of the G-Language Genome Analysis
Environment Version2 |
Kazuharu
Arakawa, Koya Mori, Tatekimi Matsuzaki, Ryo Hattori, Yohei Yamada, Masaru Tomita |
| Development of Comparative Genome Analysis System (COMGA) on the
G-Language Genome Analysis Environment |
Seira
Nakamura, Tatekimi Matsuzaki, Kazuharu Arakawa, Koya Mori, Yoichi Nakayama, Masaru Tomita |
| Development of Chi Sequence Analysis System on the G-Language
Genome Analysis Environment |
Daisuke
Kyuma, Kazuharu Arakawa, Reina Uno, Yoichi Nakayama, Masaru Tomita |
| System for Extraction of Protein Interaction Based on
Aging-Related Corpus |
Hyuk-Gyu
Cho, Dae Ui Park, Hyuk-Chul Kwon, Hea Young Chung |
| AgingDB : Aging-Related Signal Pathway Imagemap and Protein
Interaction Visualization |
Dae
Ui Park, Chul Hong Kim, Seong Eui Hong, Byung Pal Yu, Hea Young Chung |
| A Legume Lotus japonicus Genome Annotation | Yasukazu
Nakamura, Erika Asamizu, Takakazu Kaneko, Tomohiko Kato, Shusei Sato, Satoshi Tabata |
| A High-throughput Annotation System of Rice Genome Sequence at
RGP |
Atsuko
Idonuma, Nobukazu Namiki, Takashi Matsumoto, Satoshi Nobushima, Shigehiro Honda,Takuji Sasaki |
| ETools: Tools to Handle Biological Sequences and Alignments for
Evolutionary Studies |
Toshinori
Endo, Soichi Ogishima, Hiroshi Tanaka |
| An Extracting System of Accurate ORFs from cDNA Sequences | Tetsuo
Nishikawa, Katsuhiko Murakami, Koji Hayashi, Hiroyuki Sato, Tetsuji Otsuki, Naoko Kasahara, Tomohiro Yasuda, Kouichi Kimura, Keiichi Nagai, Ryotaro Irie, Tomoyasu Sugiyama, Takao Isogai |
| Intris:A Viewer for cDNA-Genome Alignments Enabling Efficient Detection | Kouichi Kimura, Tetsuo Nishikawa, Keiichi Na |
| Prediction of Random PCR Products and Its Inverse Problem | Ayumu Saito, Koichi Nishigaki |
| BioTags: A JSP Tag Library for Bioinformatics Website Construction | Aki
Hasegawa, Ryo Umetsu, Akihiko Konagaya |
| A Web Site for Location to Location Correspondence (L2LC):
Circular Genome Comparison from Related Gene Configuration |
Kentaro
Mori, Satoshi Fukuchi, Ken Nishikawa, Katsuhisa Horimoto |
| Genome Scenario:The Integrated Environment for Genome Analysis | Toshiyuki
Koike, Akiko Inoue, Kazuo Takehana, Katsuji Matsumura, Jiro Araki, Takehiko Ito, Masako Kuroda |
| A Web Based Mutation Analysis System for BRCA Genes | Jun-Hyung
Park, Byeong-Chul Kang, Heung-Soo Park, Hee-Keyung Park, Cheol-Min Kim |
| An Application of Special Function Units of the CRAY SV1 System
to a Contamination Problem of Human Chromosome 21 and 11 |
Akira Iida, Kenji Oosawa, Asao Fujiyama |
| THEMATICS as a Tool for Functional Genomics | Mary Jo Ondrechen |
| FAMS and FAMSBASE: Modeling of All the Genomes and Database | Mitsuo
Iwadate, Shigetsugu Kawakita, Hideaki Umeyama |
| Using Unlabeled MEDLINE Abstracts for Biological Named Entity
Classification |
Manabu Torii, Vijay K. Shanker |
| Construction of User Model Using Behavior of Retrieved Ontology | Masaru Takeya, Hisataka Numa, Kotaro Baba |
| Extracting Biological Keywords from Scientific Text | Wen-Juan Hou, Hsin-Hsi Chen |
| A Text Mining Middleware for Life Science | Harunobu
Kubo, Naohiko Uramoto, Stephan Grell, Hirofumi Matsuzawa |
| Toward Ontology-Based Knowledge Extraction from Biomedical Literature | Satoshi
Kamegai, Kenji Satou, Akihiko Konagaya |
| Sense Disambiguation in PubMed Abstracts Using Text and Data Mining | Yun
Jeong Choi, Seung Soo Park, Min Kyung Kim, Hyun Seok Park |
| AGEV: Automated Gene Extraction through Literature Mining and
Visualization of Gene Structure |
Seong-Eui
Hong, Dae-Ui Park, Chul-Hong Kim, Byung-Pal Yu, Hae-Young Chung |
| Identification of Novel Genes Associated with Rat Leukemogenesis
by Clustering Analysis |
Kenichi
Koami, Shinya Yamakita, Tamotsu Irino, Mitsuhiko Osaka |
| Understanding the Genetic Information Processing at Giant DNA
Chain Aggregate by Spermidine, ATP and Mg++ as Biological Conditions |
Yasuo
Yonezawa, Hidetoshi Kuramochi, Sinobu Nagano |
| Comparison of Transcript Levels by DNA Microarray and Metabolic Flux Based on Flux Analysis for the Production of Poly- γ-Glutamic Acid in Recombinant Escherichia coli | Sung Ho Yoon, Sang Yup Lee |
| Design of ITS and 23S rDNA-Targeted Probes and Its Usefulness
for the Identification of Bacterial Pathogens |
So
Young Yoo, Kyung Hee Chang, Seung Min Yoo, Sun Young Park, Nae Choon Yoo, Ki Chang Keum, Won Min Yoo, June Myung Kim, Sang Yup Lee |
| Whole Genome PCR Scanning Analyzer and Its Application to
Bacterial Genome |
Masatomo
Najima, Ken Kurokawa, Makoto Ohnishi, Tetsuya Hayashi, Teruo Yasunaga |
| Combined Metabolome and Transcriptome Analysis of Bacillus subtilis Cells Cultured on Different Carbon Sources |
Keiko
Matsuda, Hirotake Yamaguchi, Yuki Ueno, Tomoyoshi Soga, Yasutaro Fujita, Takaaki Nishioka |
| A New Method for Phenome Analysis of Arabidopsis
thaliana: Collection of Morphological Information by Using 3-Dimensional Laser Scanner |
Tetsuro
Toyoda, Naohiko Heida, Eli Kaminuma, Akihiko Konagaya, Naoki Okamoto, Minami Matsui |