GIW 2001 List of Accepted Posters

• "Latent Periodicity of Many Genes"
  -- Eugene Korotkov, Nikolay Kudryaschov
  
  
• "Computer Modeling of JAK/STAT Signal Transduction Pathway"
  -- Satoshi Yamada, Akihiko Yoshimura
  
  
• "Gene Expression Analysis Using Fuzzy ART"
  -- Shuta Tomida, Taizo Hanai, Hiroyuki Honda, Takeshi Kobayashi
  
  
• "Identifying Genetic Network Using Experimental Time Series Data by Boolean Algorithm"
  -- Kazumi Hakamada, Taizo Hanai, Hiroyuki Honda, Takeshi Kobayashi
  
  
• "Prognostic Prediction of Lymphoma by Gene Expression Profiling Using FNN"
  -- Tatsuya Ando, Taizo Hanai, Hiroyuki Honda, Takeshi Kobayashi
  
  
• "Blind Gene Classification -- An Application of A Signal Separation Method"
  -- Gen Hori, Masato Inoue, Shin-ichi Nishimura, Hiroyuki Nakahara
  
  
• "Modeling photorespiration pathway through E CELL"
  -- Pawan Dhar, Emily Wang, Yoichi Nakayama, Masaru Tomita
  
  
• "Correspondence between a Genetic Network Inferred From Expression Profiles by Strategic Gene Disruptions and the Known Regulatory Relationships"
  -- Sachiryo Aburatani, Katsuhisa Horimoto, Hiroyuki Toh, Ayumi Shinohara, Keisuke Iida, Kosuke Tashiro, Satoru Kuhara
  
  
• "Molecular Dynamics Simulation of Protein Translocation across a Membrane"
  -- Mitsuharu Okazaki, Tomoki Watanabe, Naohito Urakami, Takashi Yamamoto
  
  
• "An Approach for Homology Search with Reconfigurable Hardware"
  -- Yoshiki Yamaguchi, Tsutomu Maruyama, Akihiko Konagaya
  
  
• "Current Status of ProTherm: Thermodynamic Database for Proteins and Mutants"
  -- M. Michael Gromiha, Hatsuho Uedaira, Jianghong An, Samuel Selvaraj, Ponraj Prabakaran, Akinori Sarai
  
  
• "Comparative Analysis on the Conservation of two Orthologous Genome Regions"
  -- Taehyung Kim, Hyeyoung Cho, Hojin Jung, InSong Koh, Jong H. Park
  
  
• "ASIAN: Automatic System for Inferring a Network from Gene Expression Profiles"
  -- Katsuhisa Horimoto, Hiroyuki Toh
  
  
• "Maintenance of Microbial Genome Architecture"
  -- Kentaro Mori, Katsuhisa Horimoto, Satoshi Fukuchi, Ken Nishikawa
  
  
• "BIOCAD project for constructing a biological system in silico"
  -- Tadashi Adachi, Nana Matoba, Hiroyuki Kurata
  
  
• "Interactive Evolution of a Gene Regulatory Network Model"
  -- Atsushi Mimura, Hitoshi Iba
  
  
• "Simulation and system analysis of gene regulatory networks using the two-phase partition method"
  -- Hiroyuki Kurata, Takahiro Inoue, Yoshiyuki Sumida, Shin Tanaka, Takashi Ohashi
  
  
• "In silico metabolic pathway modeling and analysis of Mycoplasma pneumoniae"
  -- Jin Sik Kim, Sang Yup Lee
  
  
• "RiceGAAS: An Automated Annotation System for Rice Genome"
  -- Hisataka Numa, Katsumi Sakata, Yoshiaki Nagamura, Baltazar A. Antonio, Atsuko Idonuma, Yuji Shimizu, Ikuo Horiuchi, Takashi Matsumoto, Takuji Sasaki, Kenichi Higo
  
  
• "Identification and Phylogenetic Analysis of Schizophrenia Associated Retrovirus (SZRV) Element in the Human GenBank Database"
  -- Jun-Seop Kim, Sang-Bae Kim, InSong Koh
  
  
• "Methods for Detecting the Signal Peptide in Transmembrane and Globular Proteins"
  -- Demelo Madrazo Lao, Toshio Shimizu
  
  
• "Aligning and Scoring Motifs based on Secondary Characteristics"
  -- Pedro Gonnet, Frederique Lisacek
  
  
• "Extraction of Related Genes in the Vesicular Transport by Simultaneous Comparison of Two-hybrid and Microarray Data"
  -- Akiyasu C. Yoshizawa, Akihiro Nakaya, Susumu Goto, Minoru Kanehisa
  
  
• "Discovery and classification of peptide family G-protein coupled receptors in the human genome sequence"
  -- Maria E. Levchenko, Toshiaki Katayama, Minoru Kanehisa
  
  
• "The origin and evolution of eukaryotic protein kinases"
  -- Asako Koike, Kenta Nakai, Toshihisa Takagi
  
  
• "Heuristic Probe Mining Based on Multiple Sequence Analysis"
  -- Byeong-Chul Kang, Heung-Soo Park, Ho-Young Kang, Hee-Kyung Park, Cheolmin Kim
  
  
• "Comprehensive Analysis of Transmembrane Protein Sequences in 39 Microbial Genomes"
  -- Masafumi Arai, Keisuke Noto, Demelo Madrazo Lao, Masami Ikeda, Toshio Shimizu
  
  
• "Toward an Ontological Classification and Mapping of Bioinformatics Fields"
  -- Tae-Hyung Kim, Gil-Mi Ryu, InSong Koh, Jong Park
  
  
• "An Integrated Bioinformatic Search Server: Sequences, Structure, Interaction, and Function of Proteins (SSIF) Server"
  -- Jae-Hyung Lee, InSong Koh, Jong Park
  
  
• "ReView: A Viewer to Display the Relation of Protein-coding Region And Repetitive Patterns"
  -- Yu-Tin Chen, Yu-Chung Chang, Yen-Hua Huang, Ueng-Cheng Yang
  
  
• "A Clustering Method for Discovering Patterns Using Gene Regulatory Processes"
  -- Siyoung Park, Daewoo Choi, Chi-Hyuck Jun
  
  
• "Evolution of the MIR Elements Located in Coding Regions of Human Genome"
  -- Maria Chaley, Eugene Korotkov, Nicolai Kudryashov
  
  
• "Bio-GilJabee: an ontological source dictionary for Bioinformatics"
  -- Myungguen Chung, Kiho Park, InSong Koh, Jong Park
  
  
• "Lorenz Curves and Statistical Distribution Functions on Frequency Repetition"
  -- Eugene Korotkov, Nikolay Kudryaschov, Tagir Valiullin
  
  
• "Detection of Hidden Periodicity in Protein Sequences and Its Correlation with Structure and Function of Proteins"
  -- Andrew A. Laskin, Eugene V. Korotkov, Nikolai A.Kudryashov
  
  
• "Drug to SNP: A Pharmacogenomics Database for linking drug response to SNPs"
  -- Ju-Youn Lee, In-Song Koh
  
  
• "Development of the Bacteria Analysis System on G-language Genome Analysis Environment"
  -- Koya Mori, Kazuharu Arakawa, Masaru Tomita
  
  
• "G-language Genome Analysis Environment"
  -- Kazuharu Arakawa, Koya Mori, Masaru Tomita
  
  
• "A System for Integration of Heterogeneous Biological XML Data"
  -- Noboru Matoba, Junko Tanoue, Masatoshi Yoshikawa, Shunsuke Uemura
  
  
• "Graphical representation of Gene Ontology in Scalable Vector Graphics"
  -- Junko Tanoue, Noboru Matoba, Masatoshi Yoshikawa, Shunsuke Uemura
  
  
• "Regulation Analysis by Combining the Information Obtained from the mRNA Expression, Protein Expression and Metabolic Fluxes"
  -- Chen Yang, Qiang Hua, Kazuyuki Shimizu
  
  
• "Distribution Analysis of 5' Splice Site-Like Sequences in Human and Mouse pre-mRNAs"
  -- Sumie Kitamura-Abe, Nobuyuki Takahashi, Atsushi Sakurai, Takanori Washio, Mineichi Kudo, Masaru Shimbo, Akihiro Tsutsumi, Masaru Tomita
  
  
• "Detecting transcriptional cis-regulation from gene expression data"
  -- Yoshinobu Igarashi, Yasushi Okuno, Jean-Philippe Vert, Minoru Kanehisa
  
  
• "Improvement of Chemosensitivity Prediction by Transcriptional Profiling in Hepatoma Cells"
  -- Yujin Hoshida, Masaru Moriyama, Motoyuki Otsuka, Naoya Kato, Yasushi Shiratori, Naohiko Seki, Masao Omata
  
  
• "Comparison of Methods for Probe Design"
  -- Noriyuki Hosaka, Ken-ichi Kurata, Hiroshi Nakamura
  
  
• "Comparison between Linear Chromosomes in Terms of Duplicate Genes: Implication of Whole Genome Duplication in Yeast"
  -- Satoshi Fukuchi, Ken Nishikawa, Katsuhisa Horimoto
  
  
• "Inference of a gene network from the experimentally observed expression data by using AIGNET"
  -- Yuji Arikawa, Yoriko Takahashi, Shoji Watanabe, Yukihiro Maki, Masahiro Okamoto, Yukihiro Eguchi
  
  
• "Development of a novel functional gene discovery system by hybrid-ribozyme libraries in the post genome era"
  -- Hiroaki Kawasaki, Eigo Suyama, Reiko Onuki, Kazunari Taira
  
  
• "Estimation of Genetic Networks of the Circadian Rhythm in Cyanobacterium using the E-CELL system"
  -- Fumihiko Miyoshi, Yoichi Nakayama, Masaru Tomita
  
  
• "Database on mRNA-located Eukaryotic Expression Signals Influencing Translation Efficiency and Specificity"
  -- Alex V. Kochetov, Dmitri Grogorovich, Nikolay A. Kolchanov, Akinori Sarai
  
  
• "Comprehensive Functional Identification of Prokaryotic Transmembrane Proteins by Binary Topology Pattern"
  -- Yoshiaki Sugiyama, Masafumi Arai, Toshio Shimizu
  
  
• "A Network-Based Array Data Interpreter"
  -- Kotoko Nakata, Kyoko Toda, Eiichiro Ichiishi, Tsuguchika Kaminuma
  
  
• "Target Prediction of Transcription Factors: Refinement of Structure-Based Method"
  -- Akinori Sarai, Samuel Selvaraj, Michael M. Gromiha, Joerg-Gerald Siebers, Ponraj Prabakaran, Hidetoshi Kono
  
  
• "A Secondary Database for Journal Search based on Experimental Materials and Methods in Alzheimer's Disease Research"
  -- Younghee Lee, Bumjin Kim, InSong Koh
  
  
• "Comparative Analysis of Protein Charge Distribution in Genome Scale"
  -- Ke Runcong, Shigeki Mitaku
  
  
• "Recent Developments in ProNIT: Thermodynamic Database for Protein-Nucleic Acid Interactions"
  -- Ponraj Prabakaran, Jianghong An, M.Michael Gromiha, Samuel Selvaraj, Hatsuho Uedaira, Hidetoshi Kono, Akinori Sarai
  
  
• "Symbolical Kernel-based Reasoning: Its Application to the Rule Extraction in Dictyostelium Discoideum DNA"
  -- Moritoshi Yasunaga, Kentaro Ushiyama, Ikuo Yoshihara, Jung Hwan Kim
  
  
• "A Novel Protein Soft Docking Algorithm Based on Spectral Analysis of Shape Complementarity"
  -- Atsushi Yoshimori, Carlos A. Del Carpio M
  
  
• "A Simulation Model of Diabetes Using E-CELL System"
  -- Yasuhiro Naito, Hiroshi Ohno, Sae Seno, Yuki Oguchi, Atsumi Sano, Hiromu Nakajima, Masaru Tomita
  
  
• "Scoring Protein-Substrate Complex Decoys Based on Electrostatic and Hydrophobic Complementarities: Evaluation of Hormone-Receptor Interactions"
  -- Yoshihiro Katsuta, Atsushi Yoshimori, Carlos A. Del Carpio M
  
  
• "Detection of tRNA Genes with Introns from DNA Sequences of Archaea"
  -- Makoto Kinouchi, Yoshihiro Kudo
  
  
• "Protein Folding Recognition Based on Amino Acid Physicochemical Property Profiles"
  -- Daisuke Komatsu, Atsushi Yoshimori and Carlos A.Del Carpio M.
  
  
• "A Bioinformatic Approach for RNA 3D Structure Prediction: Development of a Knowledge-base for 2D-to-3D Structural Elements Compatibility Analysis"
  -- Yoshimitsu Shigenobu, Carlos A.Del Carpio
  
  
• "Quadtree Representation of DNA Sequences"
  -- Natsuhiro Ichinose, Tetsushi Yada, Toshihisa Takagi
  
  
• "Towards Simulation of Whole Metabolic Pathways in Human Erythrocyte"
  -- Ayako Kinoshita, Yoichi Nakayama, Masaru Tomita
  
  
• "Development of PDBj-ML"
  -- Nobutoshi Ito, Hisashi Sakamoto, Kaori Kobayashi, Haruki Nakamura
  
  
• "Towards a Unified Genome Database of Nitrogen Fixation and Photosynthesis Organisms"
  -- Yasukazu Nakamura, Satoshi Tabata
  
  
• "Assessment of a Database System, On-web GP, for Identifying Species"
  -- Mohammed Naimuddin, Mariko Kouduka, Ayumu Saito, Koichi Nishigaki
  
  
• "PepAssem, a Peptide Assembly Algorithm for a Complex Protein Mixture"
  -- Sang-Hee Shim, Doo Soo Chung
  
  
• "Classification and Analysis of Inter-helical Loop Segments in Membrane Proteins"
  -- Takatsugu Hirokawa, Makiko Suwa, Yutaka Akiyama
  
  
• "Prediction System for Dumbbell-type Proteins: SOSUIdumbbell"
  -- Nobuyuki Uchikoga, Shun-ya Takahashi, Ke Runcong, Fumitsugu Akazawa, Masashi Sonoyama, Shigeki Mitaku
  
  
• "Analysis of Complementarity of protein-protein and protein-DNA Interactions using the Molecular Surface Database, eF-site."
  -- Kengo Kinoshita, Yuko Tsuchiya, Haruki Nakamura
  
  
• "Efficient Numerical Optimization Technique Based on Real-coded Genetic Algorithm"
  -- Takanori Ueda, Nobuto Koga, Masahiro Okamoto
  
  
• "Conformational Search and Potential Energy Analysis of Protein beta-hairpin Formations by Parallel Exhaustive Tree Search"
  -- Makoto Ando, Yutaka Akiyama, Hideo Matsuda
  
  
• "Adapting in vitro selected oligoDNAs for Recognition of Natural Sites and for Analysis of SNPs and Mutagenesis"
  -- Galina V. Orlova, Julia V. Ponomarenko, Anatoly S. Frolov, Mikhail P. Ponomarenko, Mikhail S. Gelfand
  
  
• "Statistical Analysis of Genomic Information: various periodicities in DNA sequence"
  -- Atsushi Fukushima, Makoto Kinouchi, Yoshihiro Kudo, Shigehiko Kanaya, Hirotada Mori, Toshimichi Ikemura
  
  
• "Gene Toggle Switches only with Positive Feedback Loops"
  -- Tetsuya Kobayashi, Luonan Chen, Kazuyuki Aihara
  
  
• "Rank Aggregation Method for Biological Database"
  -- Jun Sese, Shinichi Morishita
  
  
• "An Electrophysiological Simulation Model of The Myocardial Cell Using E-CELL System"
  -- Motohiro Yoneda, Yasuhiro Naito, Shoko Miyamoto, Sayaka Ishinabe, Shinobu Kuratomi, Nobuaki Sarai, Satoshi Matsuoka, Akinori Noma, Masaru Tomita
  
  
• "DNA Data Compression in the Post Genome Era"
  -- Hisahiko Sato, Takashi Yoshioka, Akihiko Konagaya, Tetsuro Toyoda
  
  
• "XPAK: A visualization toolkit for transcriptome analysis"
  -- Yasushi Masuda, Shigehiko Kanaya, Hirotada Mori
  
  
• "Statistical Comparison of Expression Profiles of Genes"
  -- Hijiri Maeno, Shin-ichi Matsusaki, Yasushi Masuda, Taku Oshima, Hiroko Asahi, Shigehiko Kanaya, Hirotada Mori
  
  
• "Two-layered genetic network drawings with minimum edge crossings"
  -- Atsuko Yamaguchi, Hiroyuki Toh
  
  
• "Circadian Oscillation and Stochastic Noises"
  -- Nobukazu Ohki, Masatoshi Hagiwara
  
  
• "gLdraw: A general tool for a comparison of chromosome maps"
  -- Yousuke Hayakawa, Kanako Koyanagi, Takuro Tamura, Takashi Gojobori, Tadashi Imanishi
  
  
• "Amino Acid Substitution Matrices Estimated by Maximum Likelihood" -- Leonardo de Oliveira Martins, Paolo M. de A. Zanotto
  
  
• "Visualization for Comparison between Gene Clusters Generated from Different Sources"
  -- Shuichi Tsutsumi, Makoto Kano, Yutaka Midorikawa, Michitaka Hirose, Hiroyuki Aburatani
  
  
• "Protein Classification Comparison Server"
  -- Jun-Hyung Park, Sung-Ryong Ryu, Cheolmin Kim, InSong Koh, Jong Park
  
  
• "Evolutionary Inference of a Biological Network as Differential Equations by Genetic Programming"
  -- Erina Sakamoto, Hitoshi Iba
  
  
• "Design and development of software environment for whole-cell simulation"
  -- Yusuke Saito, Kenta Hashimoto, Takeshi Sakurada, Yuki Fujita, Kouichi Takahashi, Masaru Tomita
  
  
• "Multiple Zinc Finger Motifs With comparison of Plant and Insect"
  -- Nobuyuki Kawagashira, Yasuhiro Ohtomo, Kazuo Murakami, Kenichi Matsubara, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Shoshi Kikuchi, Kenichi Higo
  
  
• "Structural affectivity of protein chain growth by t-RNA system"
  -- Yasuo Yonezawa, Sadaharu Ueno
  
  
• "Construction of Database for Protein Classifications"
  -- Jiro Araki
  
  
• "E-CELL Simulation Environment Version 3: System Architecture of Simulation Engine"
  -- Kouichi Takahashi, Takeshi Sakurada, Yohei Yamada, Tomoya Kitayama, Masaaki Kawata, Masaru Tomita
  
  
• "Computer Simulation of the Asymmetric Cell Division in Early Development of C. elegans Embryo Using E-CELL System"
  -- Azusa Kuroki, Akio Kanai, Masaru Tomita
  
  
• "Analysis of the maternal mRNAs encoding DNA-binding motifs in the ascidian egg using SSDB"
  -- Shuichi Kawashima, Takeshi Kawashima, Akihiro Nakaya, Kazuhiro W. Makabe, Susumu Goto, Minoru Kanehisa
  
  
• "Analysis of amino acid substitution rate in proteins between hyperthermophilic and mesophilic organisms using complete genome data"
  -- Tomoya Yamashita, Goki Kashima, Akio Kanai, Asako Sato, Kenji Higashi, Takanori Washio, Masaru Tomita
  
  
• "3-D Visualization for Gene Rearrangement in Ternary Comparison"
  -- Naobumi Sasaki, Naoki Sato
  
  
• "Analysis of Dictyostelium discoideum cDNA obtained from multicellular and unicellular stages"
  -- Masumi Itoh, Yoshinori K. Okuji, Susumu Goto, Hideko Urushihara, Mineko Maeda, Yoshimasa Tanaka, Minoru Kanehisa
  
  
• "Toward Chromosome-level comparative analysis of vertebrate genomes"
  -- Katsuhiko Murakami, Hideki Noguchi, Yasushi Totoki, Tetsushi Yada, Atsushi Toyoda, Masahira Hattori, Yoshiyuki Sakaki
  
  
• "ParalogCluster: Classifying Paralogs in a Genome into Paralogous Groups"
  -- Kiyoshi Yamazaki, Makoto Ohnishi, Ken Kurokawa, Teruo Yasunaga
  
  
• "A Web Server for Multiple Sequence Alignment using Genetic Algorithm"
  -- Tsutomu Yokoyama, Takumi Watanabe, Akito Taneda, Toshio Shimizu
  
  
• "Feature Extraction from Genome Sequence using Multi-modal Neural Network"
  -- Ikuo Yoshihara, Yoshiyuki Kamimai, Moritoshi Yasunaga
• "Lag Analysis of Genetic Networks in the Cell Cycle of Budding Yeast"
  -- Mamoru Kato, Tatsuhiko Tsunoda, Toshihisa Takagi
  
  
• "Relation between Restriction Modification Genes and Genome Rearrangements Suggested from genome sequence comparison within genus Neisseria"
  -- Keiichirou Nakao, Akito Chinen, Ayaka Nobusato, Youhei Fujitani, Ikuo Uchiyama, Ichizo Kobayashi
  
  
• "Nonparametric Linkage Analysis for Complex Genetic Diseases with Linked Loci"
  -- Osamu Ogasawara, Toshihisa Takagi
  
  
• "An Automated System for Finding Seven Transmembrane Helix Receptors from Human Genome."
  -- Makiko Suwa, Toshiyuki Sato, Ikuo Okouchi, Masanori Arita, Shinichi Matsumoto, Shuichi Tsutsumi, Hiroyuki Aburatani, Kiyoshi Asai, Yutaka Akiyama
  
  
• "Modeling Environment for Large-Scale Models Using the E-CELL System"
  -- Yoichi Nakayama, Katsuyuki Yugi, Yohei Yamada, Masaru Tomita
  
  
• "CAMUS DB for Amino Acid Sequence Data"
  -- Sadahiko Misu, Takayasu Iizuka, Yuichi Kawanishi, Kaoru Fukami-Kobayashi, Naruya Saitou
  
  
• "Classification of Eukaryotic 7-tms Transmembrane Proteins by Binary Topology Pattern"
  -- Yasuhito Inoue, Yoshiaki Sugiyama, Masami Ikeda, Toshio Shimizu
  
  
• "Database for Human UV-regulated Genes"
  -- Makoto Yamazaki, Hiroko Ao, Goro Terai, Nobuo Kitamura, Toshihisa Takagi
  
  
• "Pathway Finding from Given Time-courses using Genetic Algorithm"
  -- Shinichi Kikuchi, Daisuke Tominaga, Masanori Arita, Masaru Tomita
  
  
• "Guide of Putative Alternative Splicing Site Database"
  -- Yen-hua Hunang, Yu-tin Chen, Jiunn-Jei Lai, Ueng-Cheng Yang
  
  
• "A Study of Spatial Formation of Immune Cells"
  -- Shin I. Nishimura
  
  
• "Highly Specific and Quantitative Gene Expression Profiling Based on DNA Computing"
  -- Nao Nishida, Masatoshi Wakui, Katushi Tokunaga, Akira Suyama
  
  
• "Prediction of Co-Regulated Genes in Bacillus subtilis Based on the Conserved Upstream Elements across three Closely Related Species"
  -- Goro Terai, Toshihisa Takagi, Kenta Nakai
  
  
• "DNA Microarray Data Analysis for Cancer Classification Based on Stepwise Discriminant Analysis and Bayesian Decision Theory"
  -- Sungwoo Kwon, Young-Hwan Chu, Chonghun Han
  
  
• "Ontology Based Corpus Annotation and Tools"
  -- Tomoko Ohta, Yuka Tateisi, Jin-Dong Kim, Hideki Mima, Jun'ichi Tsujii
  
  
• "Prediction of Co-regulated Genes in Prokaryote Genomes Based on the Conserved Upstream Elements Across Closely Related Species"
  -- Yuko Makita, Goro Terai, Shigeki Mitaku, Toshihisa Takagi, Kenta Nakai
  
  
• "DBTSS: DataBase of Human Transcriptional Start Sites and Full-length cDNA"
  -- Riu Yamashita, Yutaka Suzuki, Sumio Sugano, Kenta Nakai
  
  
• ""Melina" - Novel Tool for Elucidation of Consensus Motif in the Promoter Regions of Functionally Related DNA Sequences"
  -- Natalia Poluliakh, Michiko Konno, Toshihisa Takagi, Kenta Nakai
  
  
• "Dataset Construction for Gene Structure Prediction and Alternative Splicing Analysis"
  -- Masahiko Mizuno, Hideki Nagasaki, Makiko Suwa
  
  
• "Revealing mRNA Translational Signals By Primary and Secondary Structure Analyses"
  -- Igor Titov, Alex Kochetov, Nikolay Kolchanov, Akinori Sarai
  
  
• "Functional Proteomics in Silico: Putative Protein Interaction Analysis"
  -- Chung-Yen Lin, Chen-Zen Lo, Chao A. Hsiung
  
  
• "Simulation of the Pattern Formation in Multicellular Organism by Genomic Object Net"
  -- Atsushi Doi, Rie Yamane, Naoyuki Yamasaki, Haruka Yoshimori, Ryutaro Murakami, Hiroshi Matsuno, Satoru Miyano
  
  
• "Skew of Mononucleotide Frequencies, Relative Abundance of Dinucleotides, and DNA Strand Asymmetry"
  -- Chiharu Shioiri, Takahata Naoyuki
  
  
• "Computational Analysis of SOS response in Ultraviolet-Irradiated Escherichia coli"
  -- Junji Kitagawa, Kenji Yamamoto, Hitoshi Iba
  
  
• "Biopathway Model Conversion from E-CELL to Genomic Object Net"
  -- Mika Matsui, Atsushi Doi, Hiroshi Matsuno, Yuichi Hirata, Satoru Miyano
  
  
• "More Speed and More Pattern Variations for Knowledge Discovery System BONSAI"
  -- Hideo Bannai, Keisuke Iida, Ayumi Shinohara, Masayuki Takeda, Satoru Miyano
  
  
• "Genomic Object Net: Petri Net Enhancement for Multi-Cellular Processes"
  -- Yuichi Hirata, Hiroshi Matsuno, Makiko Sasaki, Satoru Miyano