GIW 2001 ADVANCED PROGRAM

Registration        The Garden Hall
 December 17         13:30 - 17:20
 December 18         08:30 - 18:00
 December 19         08:30 - 16:30


December 17, 2001 (Mon)

Opening Address
  14:00 - 14:10    Limsoon Wong (KRDL)


Paper Session 1    Gene Expression
                    Chair: Satoru Kuhara

  14:10 - 14:35    "Emerging Patterns and Gene Expression Data"
                  Jinyan Li, Limsoon Wong

  14:35 - 15:00    "Selecting Informative Genes with Parallel Genetic Algorithms in Tissue Classification"
                  Juan Liu, Hitoshi Iba, Mitsuru Ishizuka

  15:00 - 15:25    "Minimum Spanning Trees for Gene Expression Data Clustering"
                  Ying Xu, Victor Olman, Dong Xu

  15:25 - 15:50    "Characterizing the Relationship between Protein-Fusion and Gene Co-Expression"
                  Cary S. Gunther, Terry Gaasterland


Break             15:50 - 16:05


Paper Session 2   Pathway Analysis
                   Co-chair: Terry Gaasterland and Susumu Goto

  16:05 - 16:30    "Extraction of Correlated Gene Clusters by Multiple Graph Comparison"
                  Akihiro Nakaya, Susumu Goto, Minoru Kanehisa

  16:30 - 16:55    "XML Documentation of Biopathways and Their Simulations in Genomic Object Net"
                  Hiroshi Matsuno, Atsushi Doi, Yuichi Hirata, Satoru Miyano

  16:55 - 17:20    "Estimation of Bidirectional Metabolic Fluxes from MS and NMR Data Using Positional Representations"
                  Marcos J. Arauzo-Bravo, Kazuyuki Shimizu



December 18, 2001 (Tue)

Paper Session 3    Protein Sequence and Structure
                    Co-chair: Akihiko Konagaya and Richard Lathrop

  09:00 - 09:25    "A Multi-Queue Branch-and-Bound Algorithm For Anytime Optimal Search With Biological Applications"
                  Richard H. Lathrop, Anton Sazhin, Ye Sun, Nick Steffen, Sandra S. Irani

  09:25 - 09:50    "Local Multiple Alignment of Numerical Sequences: Detection of Subtle Motifs from Protein Sequences and Structures"
                  Tatsuya Akutsu, Katsuhisa Horimoto

   09:50 - 10:15   "A Graph-Based Clustering Method for a Large Set of Sequences Using a Graph Partitioning Algorithm"
                  Hideya Kawaji, Yosuke Yamaguchi, Hideo Matsuda, Akihiro Hashimoto

  10:15 - 10:40    "Prediction of Subcellular Localizations Using Amino Acid Composition and Order"
                  Yukiko Fujiwara, Minoru Asogawa


Break             10:40 - 10:55


Invited Talk       Chair: Limsoon Wong
  10:55 - 11:55    "New Data Driven Research Paradigm for the Post Genome Era"
                     Charles Lawrence (Wadsworth Center)


Lunch Break       11:55 - 13:30


Invited Talk       Chair: Takashi Ito
  13:30 - 14:30    "Protein Interactions"  
                     David Eisenberg (UCLA)

Break             15:40 - 16:00    

Paper Session 4    Protein Interaction
                    Chair: Makiko Suwa

  14:45 - 15:10    "Automatic Epitope Recognition in Proteins Oriented to the System for Macromolecular Interaction Assessment MIAX"
                   Atsushi Yoshimori, Carlos A. Del Carpio

  15:10 - 15:35    "The Potential Use of SUISEKI as a Protein Interaction Discovery"
                   Christian Blaschke, Alfonso Valencia

  15:35 - 16:00    "Conservation of Protein Interaction Network in Evolution"
                   Jong Park, Dan Bolser


JSBi Annual Meeting
  16:00 - 16:30


Poster and Software Demonstrations Session 1 

  16:30 - 18:30    JSBi Session
                    Poster: The Garden Hall Foyer
                    Software demonstrations: The Garden Hall

Social Events      Award Ceremony & Banquet 
  18:30 - 21:00     The Garden Room



December 19, 2001 (Wed)


Paper Session 5    Molecular Phylogeny
                    Chair: Hideo Matsuda

  09:00 - 09:25    "A Phylogenetic Foundation for Comparative Mammalian Genomics"
                   Peter J. Waddell, Hirohisa Kishino, Rissa Ota

  09:25 - 09:50    "Bacterial Molecular Phylogeny Using Supertree Approach"
                   Vincent Daubin, Manolo Gouy, Guy Perriere


Break            09:50 - 10:05


Poster and Software Demonstrations Session 2 

  10:05 - 12:05   JSBi Session
                     Poster: The Garden Hall Foyer
                     Software Demonstrations: The Garden Hall


Lunch Break      12:05 - 13:35


Paper Session 6   Genome Analysis 
                   Co-chair: Tatsuya Akutsu and Gene Myers

  13:35 - 14:00    "Optimally Separating Sequences"
                  Gene Myers

  14:00 - 14:25    "Indexing Huge Genome Sequences for Solving Various Problems"
                  Kunihiko Sadakane, Tetsuo Shibuya

  14:25 - 14:50    "A Mini-Greedy Algorithm for Faster Structural RNA Stem-Loop Search"
                  Jan Gorodkin, Rune B. Lyngso, Gary D. Stormo


Break            14:50 - 15:05


  15:05 - 15:30    "High-Throughput Identification, Database Storage and Analysis of SNPs in EST Sequences"
                  Francisco Jose Useche, Guang Gao, Mike Hanafey, Antoni Rafalski

  15:30 - 15:55    "Bioinformatics Issues for Automating the Annotation of Genomic Sequences"
                  Kim Carter, Akira Oka, Tamiya Gen, Matthew I. Bellgard

  15:55 - 16:20    "DNAinsight: A Web Based Image Processing System for Large Scale RLGS Analysis"
                  Katsutoshi Takahashi, Masayuki Nakazawa, Yasuo Watanabe


Closing            
  16:20 - 16:30     Kenta Nakai (U. of Tokyo)