GIW 2000 Program
Registration  Garden Hall
December 18 :  9:00 -18:30
December 19   9:00 -17:00

December 18, 2000 (Mon)

Opening Address
9:20 -9:30 	A.Keith Dunker (Washington State University)

Session 1 	Genome Analysis
9:30 -9:50 	"Rice at the Forefront of Plant Genome Informatics "
Bal A.Antonio, Katsumi Sakata, Takuji Sasaki
9:50 -10:10 	"An Integrated Analysis and Database System for Full-Length cDNA "
Tetsuo Nishikawa, Katsuhiko Murakami, Naoyuki Harada, Toshio Ota,
Tomoyasu Sugiyama, Keiichi Nagai, Ryotaro Irie, Hiroshii Matui,
Makiko Suwa, Takao Isogai
10:10 -10:30  "An Infrastructure for Comparative Genomics to Functionally
Characterize Genes and Proteins "
Clemens Suter-Crazzolara, Gunther Kurapkat
10:30 -10:50 	"Intelligent DNA Chips: Logical Operation of Gene Expression Profiles
on DNA Computers "
Yasubumi Sakakibara, Akira Suyama

Break 		10:50-11:00

Invited Talk	"Whole Genome Assemblies of the Drosophila and Human Genomes "
11:00 -12:00 	Gene Myers (Celera Genomics)

Lunch Break 	12:00 -13:20

Session 2 	Intelligent Systems and Algorithms for Molecular Biology
13:20 -13:40 	"Biological Sequence Compression Algorithms "
Toshiko Matsumoto, Kunihiko Sadakane and Hiroshi Imai
13:40 -14:00	"Sequencing by Hybridization in the Presence of Hybridization Errors "
Koichiro Doi and Hiroshi Imai
14:00 -14:20	"Visualization and Manipulation of Pedigree Diagrams "
Limsoon Wong
14:20 -14:40	"Intelligent System for Topic Survey in MEDLINE by Keyword
Recommendation and Learning Text Characteristics "
Miyako Tanaka, Sanae Nakazono, Hiroshi Matsuno, Hideki Tsujimoto,
Yasuhiko Kitamura, Satoru Miyano

JSBi Annual Meeting
14:40 -15:00 	General Meeting
15:00 -17:00 	One-Minute Talks for Poster &Software Demonstrations
17:00 -18:30 	Poster &Software Demonstrations (Garden Hall Foyer)

Social Events 	Award Ceremony &Banquet (Garden Hall Foyer)
18:30 -21:00

December 19, 2000 (Tue)

Session 3 	Expression Profile Analyses
9:00 -9:20 	"Correspondence Analysis of Genes and Tissue Types and Finding
Genetic Links from Microarray Data "
Hirohisa Kishino, Peter J. Waddell
9:20 -9:40 	"Environmental Factor Dependent Maximum Likelihood Method for
Association Study Targeted to Personalized Medicine "
Tatsuhiko Tsunoda, Ryo Yamada, Toshihiro Tanaka, Youzo Ohnishi,
Naoyuki Kamatani
9:40 -10:00 	"Expression Profiles and Biological Function "
Juan Carlos Oliveros, Christian Blaschke, Javier Herrero, Joaquin Dopazo,
Alfonso Valencia
10:00 -10:20 	"Inferring Genetic Networks from DNA Microarray Data by Multiple
Regression Analysis "
Mamoru Kato, Tatsuhiko Tsunoda, Toshihisa Takagi
10:20 -10:40 	"Cluster Inference Methods and Graphical Models Evaluated on
NCI60 Microarray Gene Expression Data "
Peter J.Waddell, Hirohisa Kishino

Break 		10:40 -10:50

Invited Talk 	"RIKEN Structural Genomics Initiative "
10:50 -11:50 	Shigeyuki Yokoyama (RIKEN &University of Tokyo)

Lunch Break 	11:50-13:00
Poster and Software Demonstrations (JSBi Session,Garden Hall Foyer)
13:00 -14:30

Session 4 	Protein Structure Analyses
14:30 -14:50 	"Protein Sequence-Structure Alignment Based on Site-Alignment
Probabilities "
Sanzo Miyazawa
14:50 -15:10 	"Clustering and Averaging of Images in Single-Particle Analysis "
Kiyoshi Asai, Yutaka Ueno, Chikara Sato, Katsutoshi Takahashi
15:10 -15:30 	"Intrinsic Protein Disorder in Complete Genomes "
A.Keith Dunker ,Zoran Obradovic, Pedro Romero, Ethan C.Garner,
Celeste J. Brown
15:30 -15:50 	"Comparing Predictors of Disordered Protein "
Xiaohong Li, Zoran Obradovic, Celeste J.Brown, Ethan C.Garner,
A.Keith Dunker

Break 		15:50-16:00

Session 5 	Protein Interaction Simulation
16:00 -16:20 	"Two-Phase Partition Method for Simulating a Biological System at
an Extremely High Speed "
Hiroyuki Kurata, Kazunari Taira
16:20 -16:40 	" A Gene Network Inference Method from Continuous-Value Gene Expression
Data of Wild-Type and Mutants "
Koji M.Kyoda, Mineo Morohashi, Shuichi Onami, Hiroaki Kitano
16:40 -17:00 	"MIAX: A System for Assessment of Macromolecular Interaction.
3)A Parallel Hybrid GA for Flexible Protein Docking "
Carlos Adriel Del Carpio M., Atsushi Yoshimori

Closing 		17:00 -17:10